Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04087 ATGGCACTGTGTAGAACTGGGCCATACCCAATTTTGGAGAGTACTGGCCTAGGTTATTCGCATATAAATTTGTCGACACAACTTTTTTTACCCGTTCCCCTGCGTTTCGCTGGACCGTTATCTAATGTAAGCAAGAGAAAGCACAAGGGAGTATGCAGTTCATCACTACGGAGAGCTGCATCTGCTTCTTCAATGGAGTCACATGAACAGGATCCAAATGCCCTTTCGGTATGCTTGGAGGAGGAAACGGATCATGTTATAAGGTTCAAAATGTCAGACTTTAATGTTTTAGATCATGTTAGCATTGGCCTTGGTGGACGGGCGGATGAGGTGGTGTTTGAAGGCAAGGTGAAGGATAGTGGTAGTCCTTTGTATAACACAAGAGTTATACTTCGACAGCTTTATAGTGCCCAGGCTCAGCGTCGAGGCAAACGAGCAATAGAGGTATTGAAAAAGCTGGTTCGCCGTAAACTTTTGTATCATTCTTACTCAATGCATGTTCATGGATATATCTCTCTGCCTGGGGATTCAAGTCATGATAGTGGTTCATTTATCCTAGTCCATGGGTATCATGGTAGCTTTTCTTTGAGACACTGGCTTCAACAGTCAGATTGGCTTCAAACTTTAGAGGCCACTCTTGCACTGGACGAAGATTCTGTTAGGAAGGTAGGAGAAGACACAACTGGAGGTCCTGCGATTTCTAGGCAATTGCGAGTTATTCGAATATTGATGAGAGATCTTCTAATTGGAGTAAATTACCTGCATAGTCATGGTCTTGCCCATACAGAGTTGAGGCTGGAAAATGTGCATATAAGCCCAATCGACAGACATATCAAAGTAGGTATACTGGGAAATGCCGCTGACTTTTGCGAGGATGGTTCAAATAGTGCCTCTATGGAAAACATGGACAGGCGACAGATGATGATTGCTTTTGACATGAGATGCGTGGGTTTCATAATGGCCAAAATGGTAATGGGAGAACTTATGGATCCTTTGATCTTTGCAAAGTTCAAATCATTCTTCACACAGGGGAATGATCCTTCATGTTTGCGACAGTTTATGTTGGAAATCCTCGGTAGAAATTCTCCATATGGAAATGCTGGCTTACAAATGCTTGATAGGAACTGGGGTGCTGGTTGGCACCTTTTATCTTTATTGCTTGCAACCAAACCTTCTCGGAGGATAAGTTGCTTGGATGCTCTAAGGCACCCATTTCTTTGTGGGCCAAGATGGCGAGTAGTCCCATCAATGGATATCATCAGATGGGGTCTGGGTTGTACTGCAATGCGTATTAGTGAGGAGTACATTTATCGTCAGCCTCAGCGCAGTAGGCTTGCCCACTTCATTGACTTAATGGAGATGTTGAACCCTCATCCAAAGCCAAAGAACTGGCTGGAGTTGCTTCCAGGCAAATGGCGTCTATTATACTGCACAGGGAAGCATGTTGGGTTGACCCTTCGCCAACCTCCTGTCCGTGTTCTAGTTGGAGATTTGCATTTAACTGTTACAAGAGAATCAAAGTTGAAGTCCAACCTTTCCTTCGTCTCTGACATTGGATTCTCAGTCATGATTGGTCAGGACTGGCCTCATGACAAAGCCGGTAAAAAAGGAAGATTGCAGGTGAATTCTTCATTTACACTAAGAGCTGGGAGACGGTTATATCTAAAGCAAGACAATACCTCAGAGAAGCTCTCCTTTCGCCCTTCTGGCAATGAGGAGGCTTTAGCTCAGAAATTTACTAGCAAGAAATGGAGAAAAATAACCCCTTTCAAGGAGTTTCCATCAAGTCTCCCTGCAGCCAAGTTTGCATCAGGTGATATTGACGTTACAATGAATCTTGATGATCCTTTAAATCAAAACATGGATACTGTAAAAAATGTTCTTCAAGAACTAAGAACACAAATTCCCCCTGAAATATTTGATCTGTCAAAGATTGTCTGTGGAACTTATGTGGACTCGAGGCTGCTTGTTCTTCGAGGGGTTAATGGATCAGCTCTCCTATTTACAAGGTCTTTTGTGGATAGAAAAAGTTCTAGTTAA 2040 0.4314 MALCRTGPYPILESTGLGYSHINLSTQLFLPVPLRFAGPLSNVSKRKHKGVCSSSLRRAASASSMESHEQDPNALSVCLEEETDHVIRFKMSDFNVLDHVSIGLGGRADEVVFEGKVKDSGSPLYNTRVILRQLYSAQAQRRGKRAIEVLKKLVRRKLLYHSYSMHVHGYISLPGDSSHDSGSFILVHGYHGSFSLRHWLQQSDWLQTLEATLALDEDSVRKVGEDTTGGPAISRQLRVIRILMRDLLIGVNYLHSHGLAHTELRLENVHISPIDRHIKVGILGNAADFCEDGSNSASMENMDRRQMMIAFDMRCVGFIMAKMVMGELMDPLIFAKFKSFFTQGNDPSCLRQFMLEILGRNSPYGNAGLQMLDRNWGAGWHLLSLLLATKPSRRISCLDALRHPFLCGPRWRVVPSMDIIRWGLGCTAMRISEEYIYRQPQRSRLAHFIDLMEMLNPHPKPKNWLELLPGKWRLLYCTGKHVGLTLRQPPVRVLVGDLHLTVTRESKLKSNLSFVSDIGFSVMIGQDWPHDKAGKKGRLQVNSSFTLRAGRRLYLKQDNTSEKLSFRPSGNEEALAQKFTSKKWRKITPFKEFPSSLPAAKFASGDIDVTMNLDDPLNQNMDTVKNVLQELRTQIPPEIFDLSKIVCGTYVDSRLLVLRGVNGSALLFTRSFVDRKSSS 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04087 679 Gene3D Transferase(Phosphotransferase) domain 1 232 408 - -
Trre6g04087 679 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 404 652 - -
Trre6g04087 679 SUPERFAMILY Protein kinase-like (PK-like) 91 418 IPR011009 -
Trre6g04087 679 Pfam PAP_fibrillin 441 666 IPR006843 -
Trre6g04087 679 ProSiteProfiles Protein kinase domain profile. 94 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g04087 679 SMART serkin_6 94 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04087 Trre-Chr6 43309650 43314838 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Trre6g04087 PAP_fibrillin 2.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04087 - - gmx:100809306 1136.71