Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04080 ATGAACTTTCCCAATCCCATGCTCATCCTAATTTGTTTCCTTTTCCTCTTCAACCTTAATCAAACACATATAGTGGCACAAGCAACCATAGAAACATGCTTAGACAATTTTTGCCACACTAATCAACCACTAATCCGATTCCCATTCCATATAGAAGGAAAACAAGCAAAGACATGTGGATATCCAGGATTCAAAGTATCATGCAATGAAAATGAAAAAATCCAAACACTTCTCAATCTACCTTATATGGAAAAACTCAAAATCCAAAAAATAAACTATGCCAAACAAGAACTTTTGGTGAATGATCCCAATAATTGTCTCCCTAAACAACTTCTCTCACTTAACCTCTCTTCTTCTCCATTTGATGCTGTTTACTACCAACAATTTACCTTTTTTAACTGCTCCTTTAACTTGGAATACCTTACCTCTAAGTATAAACCAATAGCTTGTCTAAGTGATTTTTCGAAGTATGCCGTTTTTGCGACACCTTCGCGTAAAGTGTATGTGTACTTGTCATCCGTTTGTGATCTGGTTGACACCGTGAACGTGCCAGTCAAATCGCCGTTTTTTGATCAAGTGTTGTCGTCTAAACTAGACGATGACCTTCGGTTGTCGTGGAATTCGCCGGCATGTGCTAGGTGTGAGTCTCATGGTGGACGATGTGGCTTTCAAGTTAACTCTACTTTTAAAATTGATTGTTACAATGTTCCTGCACGACGAGGGATTTCCCGTGGTGCAAGTTACCTCATAGCCATATGTGTAGGGGTGCCATCTTTGTTGTGTTTTATTTCACTATTAAGTTGGATATGCAGCAAGTTCAGATTTGGGACTCATGGTTGGGCTTGGGCCTGGGCTCATGACACTGTGGCAGATTTTGAGGCTCTTCTTGATCCACAACAATACACCAACATTTCAGGTCTTGATAAATCTACAATTGAATCTTACCGAAAAATAGTTATAGGTGATATCATACACTTACCTAAACCTAATGGCAAGACATGCCCTATATGTTTGTCGGATTATATGCCTAAAGAAACAGTGAAAACTATGCCCGAATGTGAGCATTGTTTTCATGCACAGTGCATCGATGAATGGCTTTCACTGAATGCGTCGTGTCCAATTTGTCGAACTTCTCCTACATGTGTAACATCGCAAAATCTAGCTCAATCTTGA 1173 0.3939 MNFPNPMLILICFLFLFNLNQTHIVAQATIETCLDNFCHTNQPLIRFPFHIEGKQAKTCGYPGFKVSCNENEKIQTLLNLPYMEKLKIQKINYAKQELLVNDPNNCLPKQLLSLNLSSSPFDAVYYQQFTFFNCSFNLEYLTSKYKPIACLSDFSKYAVFATPSRKVYVYLSSVCDLVDTVNVPVKSPFFDQVLSSKLDDDLRLSWNSPACARCESHGGRCGFQVNSTFKIDCYNVPARRGISRGASYLIAICVGVPSLLCFISLLSWICSKFRFGTHGWAWAWAHDTVADFEALLDPQQYTNISGLDKSTIESYRKIVIGDIIHLPKPNGKTCPICLSDYMPKETVKTMPECEHCFHAQCIDEWLSLNASCPICRTSPTCVTSQNLAQS 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04080 390 Pfam Wall-associated receptor kinase galacturonan-binding 33 102 IPR025287 GO:0030247
Trre6g04080 390 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 8 379 IPR046948 -
Trre6g04080 390 Pfam Wall-associated receptor kinase C-terminal 180 234 IPR032872 -
Trre6g04080 390 CDD RING-H2_EL5-like 334 376 - -
Trre6g04080 390 Pfam Ring finger domain 333 376 IPR001841 -
Trre6g04080 390 SMART ring_2 334 375 IPR001841 -
Trre6g04080 390 ProSiteProfiles Zinc finger RING-type profile. 334 376 IPR001841 -
Trre6g04080 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 296 381 IPR013083 -
Trre6g04080 390 SUPERFAMILY RING/U-box 333 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04080 Trre-Chr6 43258716 43261471 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04080 31 380 C3H Transcription Factor Family AT2G46495 34.637 3.87e-63 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04080 - - vun:114163980 478.018