Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04054 ATGGTATGCGGAAGGTGTGTGAGTTCTATTTTTCTTCGAGCTGCAAAGAGATTGCAATTCAATCACGTTGTTGTTGATGTTGTTGGGAGAAACTGTTTAACAACAAGAGTTCATCCACATCCACAATTTGTTCCTAATCGTTTTTTTAATAGATACATAGGGATGATGGTTGATACAGCAGGTTCTATGTCAACAAGGGCTGGTCCCTCTGTCGATATGGTTTCACAGAAAGATGATGATACTGCTCGTTCTGGTTTTGTTACTGGTGGATGGAAAAGTGAAGATGAAAAACTTAGCTGCGGGTATTCAAGCTTTAGGGGGAAGAGAGTGACCATGGAGGATTTCTATGATATTAAGACATCAATCATTGATGGTCGTTCAGTGTGCTTATTTGGAATATTTGATGGTCATGGCGGTTCTCGTGCTGCTGAGTATTTGAAGGATCATTTATTTGAGAATCTCATGAAGCATCCAAAGTTTTTGACGGACACCAAATTGGCTATAAGTGAAACATATCAGCAGACTGATGCTGCATTTCTGGACTCTGAAAAAGATAATTTCCGGGATGACGGTTCTACTGCTTCAACCGCTGTTTTGGTTGATAACCATCTTTATGTTGCCAATGTTGGAGATTCTAGAACTGTAATATCAACAGCTGGAAAAGCAATTGCTCTCTCTGAGGATCATAAACCAAATAGAAGTGACGAGCGGAAGAGAATTGAGAATGCTGGGGGTGTTGTCATGTGGGCAGGTACTTGGAGGGTCGGAGGGGTTCTAGCAATGTCTCGTGCATTTGGCAACCGTATGCTGAAGCCATTTGTTGTAGCAGAACCTGAAATCCAGGACCAGGAGATAGATGAAAAAACTGAGGTTCTTGTTCTTGCAAGCGATGGAGTCTGGGATGTAGTACAAAATGAGGATGCTGTTTCTCTTGCACGTGCGGAAGATGCAGCTGAGGTAGCTGCTCGTAAGTTAACAGAAGCCGCTTTTAATCGTGGCAGTGCAGATAACATTACTTGCATTGTGGTACGATTCAATCATGAAAAAAGACACCCAGCTAATCCTGATAAAGTTGGTCCAGCTAGCAGTCAGCAGAAGTAG 1101 0.4233 MVCGRCVSSIFLRAAKRLQFNHVVVDVVGRNCLTTRVHPHPQFVPNRFFNRYIGMMVDTAGSMSTRAGPSVDMVSQKDDDTARSGFVTGGWKSEDEKLSCGYSSFRGKRVTMEDFYDIKTSIIDGRSVCLFGIFDGHGGSRAAEYLKDHLFENLMKHPKFLTDTKLAISETYQQTDAAFLDSEKDNFRDDGSTASTAVLVDNHLYVANVGDSRTVISTAGKAIALSEDHKPNRSDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKPFVVAEPEIQDQEIDEKTEVLVLASDGVWDVVQNEDAVSLARAEDAAEVAARKLTEAAFNRGSADNITCIVVRFNHEKRHPANPDKVGPASSQQK 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04054 366 PANTHER PROTEIN PHOSPHATASE 84 345 IPR015655 GO:0004722|GO:0006470
Trre6g04054 366 CDD PP2Cc 99 345 IPR001932 -
Trre6g04054 366 Gene3D - 90 354 IPR036457 -
Trre6g04054 366 FunFam Probable protein phosphatase 2C 76 91 351 - -
Trre6g04054 366 SUPERFAMILY PP2C-like 96 347 IPR036457 -
Trre6g04054 366 SMART PP2C_SIG_2 95 345 IPR001932 -
Trre6g04054 366 SMART PP2C_4 89 343 IPR001932 -
Trre6g04054 366 ProSitePatterns PPM-type phosphatase domain signature. 130 138 IPR000222 GO:0043169
Trre6g04054 366 ProSiteProfiles PPM-type phosphatase domain profile. 99 345 IPR001932 -
Trre6g04054 366 Pfam Protein phosphatase 2C 101 338 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04054 Trre-Chr6 42989068 42995580 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04054 1 349 PP2C-type Phosphatase Gene Family AT5G53140 65.922 2.02e-164 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04054 K17506 - gmx:100805795 521.931