Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04053 ATGGAGTGCAACAAAGATGAGGCAGTTAGGGCCAAAGAAATAGCAGAGAGGAAATTTTCTGAAAGGGAATATATCGGTTCAAAGAAGTTTGCTCTCAAGGCTCAAAATTTGTATCCTGATTTGGAGGATATTTCCCAGTTTTTGACGACTATTGATATTTATATATCTGCCGAAAACAAAGTAAGTGGAGAAATGGATTGGTATGGTATACTTGGAGTGAGCCCCTTTGCTGATGAAGAGACTGTTAGAAAGCAATACAGGAAGCTGGCTCTCACCCTTCACCCGGATAAAAACAAGTCTTTAGGTGCAGAGGGTGCATTTAAGCTGGTTTCAGAGGCATGGAGTTTGTTATCAGATAAGACCAAAAGACTAGAATATAACCAGAAGAGGAGTTTGAAAACCTTCCAACATACTACTCCCAACCGTGCTGGGCATCCATCCAATGTACCCACTTCAAATGGTTATTATCATTTTAAGAAGAATGCAACTTCAAACGCGAGGACTGGGAATAATAAATCTCGGGCTCCTTCGGCTTCTGTCCCTCCTCCACAGAAAAAGGCTGAAACCTTTTGGACGCTCTGTAATAAGTGCCGGACACATTATGAATATCTCAGAGTTTATTTGAATCACACCCTTTTATGTCCCAACTGTAATGAAGCTTTTGTGGCTGTAGAGAGGGGTCCTCCTCCCAATGTTTTTAAGCCATCAAATTTGTCCTCCCATCAACAGAACCAGGATTCTCGACGCCATGCTGGAAGTAATAATTCAAACCTTCAGTGGGGTTCCCACTCCAGAATGGCTGGTTTTGGTAGCACAGATGGATCCTCATCTGTTGCCGCTCAAGCTGCAAGTGTTGTGCAGAAAGCAAGTGAGAAAGTAAAGAGAGAAGGAGCACCATCAATTTCTGAATGGGAGAGGATTCAAATGTCTAAGAAAGCTGATGGTTCTATGAAGAAAAGGAAGACAGATGATGTTCGCGTTAATGGTATTCCAGGATATATGCCAAATCATATGGCTATGGGACATGGAGCAGCAGGTTTGGGCAGTTTCTCTGATCCAGGAAAGACTAACATGGAGAAAGGAAGGACTTACGGTTTTTCAGGTCTTGCTGGCAAGCAGCATTACAGCATGCGAGAGTTGTCAATGTTTGAGTTACGAAACATGTTGATGGATAAGTCACGAAATGAAATTCGCAAGGAACTTGAAGAGTTGAGGTTAAAGGCTGAAGCTAAGTTTACTAACAAGAACAAAGAGGGTAAGAGACAGAAATCCACATTTAATGGCAAAACAACTGGTTCAGAGAAATACGGAGAGTCCAATGTTAATGGCAATAAGCATTTTGATGTTGATTCTTTACCTGTCACATCTGATGATACGGTTAAGAAGAGCCAAGCCTATGTTACAATCAATGTTCCGGATCCTGATTTTCACAATTTTGACCAGGATAGAGCTGAAGGTTCCTTTGCAGAGGACCAAGTCTGGGCTGCTTATGATGATGACGATGGAATGCCCAGATATTATGCTAGAATTCACAAGGTGATCTCCCTAAAGCCATTTAGAATGCGGATCAGTTGGCTTAACTCTCGAAGCAACAGTGAATTGGGCCCAATAGATTGGGTTAGGTGGACAAAAGGCACCAGAGGAGTTGTCCGCATCTTTCCTGGCAAAGGGGAAGTCTGGGCACTTTATAGAAACTGGTCTCCTGATTGGAATGAACATACTCCGGATGATGTGATACACAAGTATGACATGGTGGAAGTGCTTGATGATTTCAGTGAAGAGCAAGGTATATTAGTTACTCCCCTTGTTAAGTCTCCTGGCTTTAGGACAGTATTCCAAAGGCACAACGACCATAATGAGGTTAGAAGGATTCCTAAAGAGGAGATGTTTCGATTCTCTCATCAGGTTCCTAATCACTTGCTCAGTGGCCTAGAAGCTCATAATGCTCCAATAGGTTGTCGAGAGTTGGATCCAGCAGCTACTCCTTTAGACCTCCTTCAGATAGAAACAGAAGCTAATGAGGCACCAGGAGAGAGGATGCTTCAAAACCTTGTAGAGCAGAAATGTTCAAACGAGGATGGGAAACAAAAAATGGGATCGTAG 2103 0.4265 MECNKDEAVRAKEIAERKFSEREYIGSKKFALKAQNLYPDLEDISQFLTTIDIYISAENKVSGEMDWYGILGVSPFADEETVRKQYRKLALTLHPDKNKSLGAEGAFKLVSEAWSLLSDKTKRLEYNQKRSLKTFQHTTPNRAGHPSNVPTSNGYYHFKKNATSNARTGNNKSRAPSASVPPPQKKAETFWTLCNKCRTHYEYLRVYLNHTLLCPNCNEAFVAVERGPPPNVFKPSNLSSHQQNQDSRRHAGSNNSNLQWGSHSRMAGFGSTDGSSSVAAQAASVVQKASEKVKREGAPSISEWERIQMSKKADGSMKKRKTDDVRVNGIPGYMPNHMAMGHGAAGLGSFSDPGKTNMEKGRTYGFSGLAGKQHYSMRELSMFELRNMLMDKSRNEIRKELEELRLKAEAKFTNKNKEGKRQKSTFNGKTTGSEKYGESNVNGNKHFDVDSLPVTSDDTVKKSQAYVTINVPDPDFHNFDQDRAEGSFAEDQVWAAYDDDDGMPRYYARIHKVISLKPFRMRISWLNSRSNSELGPIDWVRWTKGTRGVVRIFPGKGEVWALYRNWSPDWNEHTPDDVIHKYDMVEVLDDFSEEQGILVTPLVKSPGFRTVFQRHNDHNEVRRIPKEEMFRFSHQVPNHLLSGLEAHNAPIGCRELDPAATPLDLLQIETEANEAPGERMLQNLVEQKCSNEDGKQKMGS 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04053 700 MobiDBLite consensus disorder prediction 134 185 - -
Trre6g04053 700 MobiDBLite consensus disorder prediction 232 274 - -
Trre6g04053 700 MobiDBLite consensus disorder prediction 414 452 - -
Trre6g04053 700 Pfam Domain of unknown function (DUF3444) 468 533 IPR024593 -
Trre6g04053 700 Pfam Domain of unknown function (DUF3444) 540 643 IPR024593 -
Trre6g04053 700 Gene3D DnaJ domain 63 175 IPR036869 -
Trre6g04053 700 ProSiteProfiles dnaJ domain profile. 66 130 IPR001623 -
Trre6g04053 700 MobiDBLite consensus disorder prediction 134 178 - -
Trre6g04053 700 ProSitePatterns Nt-dnaJ domain signature. 107 126 IPR018253 -
Trre6g04053 700 PRINTS DnaJ domain signature 86 101 IPR001623 -
Trre6g04053 700 PRINTS DnaJ domain signature 68 86 IPR001623 -
Trre6g04053 700 PRINTS DnaJ domain signature 102 122 IPR001623 -
Trre6g04053 700 MobiDBLite consensus disorder prediction 233 274 - -
Trre6g04053 700 MobiDBLite consensus disorder prediction 425 446 - -
Trre6g04053 700 SUPERFAMILY Chaperone J-domain 57 126 IPR036869 -
Trre6g04053 700 Coils Coil 394 418 - -
Trre6g04053 700 CDD DnaJ 66 119 IPR001623 -
Trre6g04053 700 PANTHER BNAC03G44070D PROTEIN 1 662 - -
Trre6g04053 700 SMART dnaj_3 65 122 IPR001623 -
Trre6g04053 700 Pfam DnaJ domain 66 127 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04053 Trre-Chr6 42972056 42974319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04053 4 229 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 32.051 1.30e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04053 - - cam:101501612 1170.22