Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04052 ATGAAACATATGATTTTCCTACTTGTCACTTTCAAGATTATAAAGAAGAAGCTGAATAAGCTAAGAGAGAGTATGGGGTTTCAAACAACACATAACACTAAGCGTGTAACACAGCCTAATTTGAAGGGAAAGGAGGATTTGATCAATGCTCAAGAACACTCTTTTATTCCAAGGGCACTAAATTTCATTCCTTCTACCTATGATTCTTGGCTGGTAAAGCACCCCTCTGCATTGAACTCATTTGATAGATTGATGAAAGGTGCCACTGGGAAGAGTATAGTTGTATTTTTAGATTATGATGGTACCTTATCACCCATTGTAAATGATCCTGATCGTGCTTTCATGTCTAATGAGATGCGTGCGGCAGTATATGAAGTTGCTACTTATTTTCCAACAGCAATAATTAGTGGAAGAAGCAGAGAGAAGGTAAAAGATTTTGTTAAGTTAAATAATTTATATTATGCTGGGAGTCATGGTATGGACATAATGGCACCATCTGGACCAATTAAATCTTCTGATGGCAACCAATTCGACAACACTACTCTTGACACAAATGGCAATGAAGTTCCCTTTCAACCTGCCAAGAAGTTTTTGCCTGCAATTCAAGAGATACTAAGAAGATTAGAGAATGTAATAAAGGACATAGAAGGTGCAAAAATAGAAGACAATGGATTCTGCATCTCAGTTCATTTCAGGCAGGTTCATGAAAAGGATTATAACGTTTTGGAAGAGAAAGTGAAGTCTGTGATTGGAAAAAATCCACTGTTCTGCTTGACTGAGGGTAAAAAGGTTTTGGAAATAAGGCCATCAATAGAATGGAACAAAGGAAATGCTGTAGAATATTTTCTAGACACATTAGGATTAATCAGTTCCAGCAATTTCCTTCCTGTGTATATTGGCGACGATAAAACTGATGAAGACGCTTTTAAGGCTATACAAAGAAGAGGGCACGGTTATCCTATTATAGTGTCTTCAACTCCAAGAGAAACAAATGCTTTGTATTCTTTGTGCGACCCGTCAGAAGTACTAACCTTCTTGTCAAGGCTAGCGAAATGGAGGAAGACATCTTAA 1071 0.3735 MKHMIFLLVTFKIIKKKLNKLRESMGFQTTHNTKRVTQPNLKGKEDLINAQEHSFIPRALNFIPSTYDSWLVKHPSALNSFDRLMKGATGKSIVVFLDYDGTLSPIVNDPDRAFMSNEMRAAVYEVATYFPTAIISGRSREKVKDFVKLNNLYYAGSHGMDIMAPSGPIKSSDGNQFDNTTLDTNGNEVPFQPAKKFLPAIQEILRRLENVIKDIEGAKIEDNGFCISVHFRQVHEKDYNVLEEKVKSVIGKNPLFCLTEGKKVLEIRPSIEWNKGNAVEYFLDTLGLISSSNFLPVYIGDDKTDEDAFKAIQRRGHGYPIIVSSTPRETNALYSLCDPSEVLTFLSRLAKWRKTS 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04052 356 FunFam Trehalose 6-phosphate phosphatase 199 356 - -
Trre6g04052 356 NCBIfam HAD-IIB family hydrolase 95 315 IPR006379 -
Trre6g04052 356 NCBIfam trehalose-phosphatase 91 351 IPR003337 GO:0003824|GO:0005992
Trre6g04052 356 CDD HAD_TPP 94 342 - -
Trre6g04052 356 Gene3D - 93 173 IPR023214 -
Trre6g04052 356 Gene3D - 181 356 IPR023214 -
Trre6g04052 356 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 44 355 IPR044651 GO:0004805|GO:0005992
Trre6g04052 356 SUPERFAMILY HAD-like 94 353 IPR036412 -
Trre6g04052 356 Coils Coil 201 221 - -
Trre6g04052 356 Pfam Trehalose-phosphatase 96 339 IPR003337 GO:0003824|GO:0005992
Trre6g04052 356 FunFam Trehalose 6-phosphate phosphatase 93 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04052 Trre-Chr6 42933589 42937142 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04052 95 312 Trehalose Biosynthesis Gene Families AT1G70290 26.724 1.84e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04052 K01087 - gmx:100809194 544.273