Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04040 ATGTACTTTGGAGTTTTGCACAGGATATGGAACCATGAGGAAGCAACACTACTTAACAGTTTTGATAATCATGATTTTCCTGACAAAGGAATTTCTAAGCTCTGCCTGGTGAATGAGCTTGATGATAGCTTGCTTCTTGCTGCTTCATCTGACGGAAACATTCGGGTATGGAAAGACTATTCCCTTAAGGGGAAACAGAAGCTTGCCACTGCTTTCTCTTCAATTCATCGTCATAAACCTGGTGTAAGAAGTCGGAATGCAGTTGTTGATTGGCACCAGCAAAGTGGTTACATGTATGCATCATGGGAGATGTCATCAATAATGGTGTGGGATCTTGATAAAGAGCAGCTTGTTAATACTATACCTTCATCATCAGAGTGCAGTGTCTCAGCCTTGGTCGCCTCTTTCCCTTGTGTTGTTAAGGTTTCAGATGTATTTTCTATTATGCAGAGCAACACACACAACGGTTTTCCAGTGATTGAGAATACACAAGAAGTGGAGAACCACTTGTTATTGGATTAG 522 0.4119 MYFGVLHRIWNHEEATLLNSFDNHDFPDKGISKLCLVNELDDSLLLAASSDGNIRVWKDYSLKGKQKLATAFSSIHRHKPGVRSRNAVVDWHQQSGYMYASWEMSSIMVWDLDKEQLVNTIPSSSECSVSALVASFPCVVKVSDVFSIMQSNTHNGFPVIENTQEVENHLLLD 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04040 173 Gene3D - 6 169 IPR015943 GO:0005515
Trre6g04040 173 SUPERFAMILY WD40 repeat-like 8 129 IPR036322 GO:0005515
Trre6g04040 173 ProSiteProfiles Trp-Asp (WD) repeats profile. 41 58 IPR001680 GO:0005515
Trre6g04040 173 PANTHER REGULATORY-ASSOCIATED PROTEIN OF MTOR 8 139 IPR004083 GO:0031929|GO:0031931
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04040 Trre-Chr6 42803398 42804840 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04040 124 171 Ion Channels AT5G26240 45.833 1.04e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04040 K07204 - ccaj:109794653 241.121