Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04038 ATGGAAGATTCAAAGAACTTAATACAAGAGCTATTACAAGGAATGGAGTTGGCAAGACAGCTTCGAATTTATCTCAACGTGTCTTCTTCTTCCAATGAAACACGTGAACTTTTGATAGAGAAAATCATATCCACATTTGAAAAAGCACTTGAAATGGTGAACTACAAAGGACATGTTATTGTGGGTGAATCATCACAACAAAAACAGAAACACACTTCAGGGACAGTTGCAATCCGAATGTTAGATTCACCACCTTTGAGCTCTAGTCCACGAAGTGAAGACTCTGACAGAGATCACAATACTCCTAGAAAAAGAAGCACTAGTCTACCAATTAGATGGACAAAACAAATTCGAGTTTCACCGGGAATGGCGGTGGAAGGGCCTCTTGACGATGGATATAGTTGGAGAAAATATGGCCAAAAAGACATTCTTGGGGCCACACACCCAAGGTGTAACACCCCATTTTCATAA 471 0.4013 MEDSKNLIQELLQGMELARQLRIYLNVSSSSNETRELLIEKIISTFEKALEMVNYKGHVIVGESSQQKQKHTSGTVAIRMLDSPPLSSSPRSEDSDRDHNTPRKRSTSLPIRWTKQIRVSPGMAVEGPLDDGYSWRKYGQKDILGATHPRCNTPFS 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04038 156 Gene3D WRKY domain 113 153 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre6g04038 156 MobiDBLite consensus disorder prediction 62 112 - -
Trre6g04038 156 SMART WRKY_cls 129 155 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre6g04038 156 MobiDBLite consensus disorder prediction 91 105 - -
Trre6g04038 156 Pfam WRKY DNA -binding domain 130 151 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre6g04038 156 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 3 150 IPR044810 GO:0003700
Trre6g04038 156 SUPERFAMILY WRKY DNA-binding domain 127 151 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre6g04038 156 MobiDBLite consensus disorder prediction 62 76 - -
Trre6g04038 156 ProSiteProfiles WRKY domain profile. 124 150 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04038 Trre-Chr6 42746824 42747789 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04038 2 150 WRKY Transcription Factor Family AT5G24110 40.000 3.00e-25 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre6g04038 WRKY 3.9e-07 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04038 - - psat:127082223 213.001