Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04033 ATGGATGATACCTTATATGACATTTTTGAAGACAGAACAGAATTTGGAAACAGCAACAATTTTAGTGTAGCAGATGATGATCTTTTTGCCATTTTAGAGAGTCTGGAAAATTTCACTGATTTTTCTCTCATCAACCATGAAGCTGAAGCTGTTACTCCAAAAGAAAATGAGGACAGTTCTACCTCAAGATTGGTGTCTCAGAAATCAACCTCTTCACTTCAAGATTCTGAAACTGAACTTGAAACAGAACACAAAAGCAAGAGACAGAAGCTTACACCTACTTTGTTAGAGGAACAGATTAACAATGTTGGACAACAAAGGGTTTCTCACATTACTGTTGAGCGTAACAGAAGAAAGCAAATGAATGAACATTTATCTGTTTTAAGGTCTCTTATGCCTTGCTTTTATGTCAAAAGGGGAGATCAAGCATCAATAATTGGAGGTGTAGTTGATTACATCAATGAGTTGCAACAACTACTCCAAGCTCTTGAAGCCAAGAAACAAAGAAAAGTATATAGTGAAGTACTAAGTCCAAGACCTTCACAACTAAGTCCAAGGTTAATTTCAAGTCCAAGACCTTCACCACTAAGTCCAAGAAAACCACCTCTAAGTCCTAGACTAAACCTACCAATTAGTCCAAGAACTCCACAACCAAGTAGCCCTTATAAGCCAAGATTACAACAAAGCTACATTGCACTTTCACCTCTTGATCCATCTCCTACCACTTCCTCTGGTTCCTCTGTCAATGATAATATCAATGAGCTTGTTGCAAATTCAAAGTCACTTATTGCTGATGTGGAGGTCAAGTTTTCAGGTCCTCATGTTCTTTTGAAAACTGTGTCTCAAAGAATTCCAGGTCAAGCTTTGAAGATTATATCTGCACTTGAAGATCTTGCACTTGAAATTCTCCATGTTAACATTAATAGTACTTCTGATGATACCATGATGAACTCCTTCACTATCAAGATTGGAATTGAATGCCAACTGAGTGCGGAAGAACTAGCTCAACAAATTCAGCAAACATTCTGCTAA 1032 0.374 MDDTLYDIFEDRTEFGNSNNFSVADDDLFAILESLENFTDFSLINHEAEAVTPKENEDSSTSRLVSQKSTSSLQDSETELETEHKSKRQKLTPTLLEEQINNVGQQRVSHITVERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIGGVVDYINELQQLLQALEAKKQRKVYSEVLSPRPSQLSPRLISSPRPSPLSPRKPPLSPRLNLPISPRTPQPSSPYKPRLQQSYIALSPLDPSPTTSSGSSVNDNINELVANSKSLIADVEVKFSGPHVLLKTVSQRIPGQALKIISALEDLALEILHVNINSTSDDTMMNSFTIKIGIECQLSAEELAQQIQQTFC 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04033 343 MobiDBLite consensus disorder prediction 175 224 - -
Trre6g04033 343 Pfam Helix-loop-helix DNA-binding domain 106 157 IPR011598 GO:0046983
Trre6g04033 343 MobiDBLite consensus disorder prediction 57 76 - -
Trre6g04033 343 MobiDBLite consensus disorder prediction 191 220 - -
Trre6g04033 343 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 105 156 IPR011598 GO:0046983
Trre6g04033 343 SMART finulus 111 162 IPR011598 GO:0046983
Trre6g04033 343 MobiDBLite consensus disorder prediction 49 92 - -
Trre6g04033 343 CDD bHLH_AtFAMA_like 109 181 - -
Trre6g04033 343 MobiDBLite consensus disorder prediction 175 190 - -
Trre6g04033 343 FunFam Transcription factor SPEECHLESS 97 171 - -
Trre6g04033 343 MobiDBLite consensus disorder prediction 77 92 - -
Trre6g04033 343 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 105 172 IPR036638 GO:0046983
Trre6g04033 343 Coils Coil 149 173 - -
Trre6g04033 343 Gene3D - 97 170 IPR036638 GO:0046983
Trre6g04033 343 PANTHER TRANSCRIPTION FACTOR FAMA 4 342 IPR044283 GO:0003700|GO:0010052
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04033 Trre-Chr6 42637965 42640645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04033 1 323 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 51.117 1.45e-90 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre6g04033 HLH 8.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04033 K20558 - gmx:100777437 422.935