Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04029 ATGGATAATCAACAAAATCAGAGTAAACAGAGTATCCTATGCAAATACACAGAACACCACACTGTTACAAAAAAACTCATCACAACAAAGAAAAACAGCAACAACAACAACAACACAACCATAAACCCAAGAGTTGTACGAGTATCTTTCACCGACCCTGACGCAACCGACTCATCCGGCGATGAAAGAGAAACACAACCCTTCTTCAGAAATAGAACAAAGCGTTATATAAACCGTATTGAAATCGAAACCACTGCAAAACCAACCGTCAATAGAAAAAGACCTGCCGGAGAAGCATCTGTTAAACGGCCGGTGAAGGTTCCTGCTGTCAACAACGGTAAAAAGTTCCGCGGTGTACGACAAAGACCTTGGGGAAAATGGGCGGCGGAGATTCGAGATCCTGCGAGAAGGGTTCGTCTTTGGTTAGGTACTTTCGAAACTGCAGAAGAAGCCGCCATGGTTTACGACAATGCCGCGATTAAGCTTCGTGGACCAGACGCTTTAACAAACTTCGGTACACCACCGCAGAAAGAAATTCCGGTAGAACCCACCACCGTGAAACAAGAAATGAAACCAGAAATGAAGGTAGTTGTGGACCACCCAGAAGCCGAAGCTTGTGGTTCAGGTAACTCCGGTTACGATTCCGGTGAAGAACGTTGTGTTCCACTTTCATCACCAACTTCTGTTTTAAATTTCCGGTCTAACTCCGGCGAGTCTCAAGAATCGGAAGAAAAAAGTGAAGTTGTTCTAAGAGAGTGTGAAGGTGAAACAAATTTATTCAATGAAACGGCGTCGTTTTTTCAATCTGATATGCCATGTTGGGATGACGTGTTCAATTTCGAAACTCCAGAGTTTCCTCCTTTGTTGTTTGAAGAAGAAGAACAAAACAAAATGATGTTTGGTGAAAATACGACGCCGTTTTTGTTTGATGATGAAGATTTAAATGACAACAACATTGTTCTTGCTGACTCACTCATTGATTTTGACAAAGCATGTTTTCCTTCTTCACCTTCTTCTTTCTGCCAAGTGGATGATTTCATTCAAGATATTTTGTTAGCCTCAGATCCTCTCGTTGTTCTTTGA 1083 0.4211 MDNQQNQSKQSILCKYTEHHTVTKKLITTKKNSNNNNNTTINPRVVRVSFTDPDATDSSGDERETQPFFRNRTKRYINRIEIETTAKPTVNRKRPAGEASVKRPVKVPAVNNGKKFRGVRQRPWGKWAAEIRDPARRVRLWLGTFETAEEAAMVYDNAAIKLRGPDALTNFGTPPQKEIPVEPTTVKQEMKPEMKVVVDHPEAEACGSGNSGYDSGEERCVPLSSPTSVLNFRSNSGESQESEEKSEVVLRECEGETNLFNETASFFQSDMPCWDDVFNFETPEFPPLLFEEEEQNKMMFGENTTPFLFDDEDLNDNNIVLADSLIDFDKACFPSSPSSFCQVDDFIQDILLASDPLVVL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04029 360 ProSiteProfiles AP2/ERF domain profile. 115 172 IPR001471 GO:0003700|GO:0006355
Trre6g04029 360 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 42 262 - -
Trre6g04029 360 FunFam Ethylene-responsive transcription factor 2 114 173 - -
Trre6g04029 360 PRINTS Ethylene responsive element binding protein signature 116 127 IPR001471 GO:0003700|GO:0006355
Trre6g04029 360 PRINTS Ethylene responsive element binding protein signature 138 154 IPR001471 GO:0003700|GO:0006355
Trre6g04029 360 Pfam AP2 domain 115 164 IPR001471 GO:0003700|GO:0006355
Trre6g04029 360 SMART rav1_2 115 178 IPR001471 GO:0003700|GO:0006355
Trre6g04029 360 CDD AP2 114 171 IPR001471 GO:0003700|GO:0006355
Trre6g04029 360 Gene3D AP2/ERF domain 114 173 IPR036955 GO:0003700|GO:0006355
Trre6g04029 360 SUPERFAMILY DNA-binding domain 115 172 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04029 Trre-Chr6 42534410 42535492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04029 14 353 AP2-EREBP Transcription Factor Family AT4G27950 39.058 1.27e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre6g04029 AP2 3.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04029 - - gmx:100807598 352.058