Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04024 ATGAATCTGTGCTGTTCTGACCATGCTGCAAGTGCAAAGGAACCTGTGAAAAAATGTAAGAAAAAAGAACTACCTATGAAAGCAGATTCTTCTCCGAGTCGTCGAGATGAAAACAAAATTGTATTTTTTGAGGATTGTTATCTTGCATTTGATCTAGAGGATCTGTTGAGAGCTTCTAGTAAGATTCTTGGAAAAGGTACTATTGGAACAACATATAAGGCTGCTTTAGAGGATGTAACCACTGTGGTTTTAAAGAGGTTGAAAGAGGTAACTGTTGGGAAAAGAGAGTTTGAACAACATATGGAAGTTGTAGGGAAAATTAAGCATGAAAATGTGGATGCATTAAGAGCTTACTATTATTCAAAAGATGAGAAACTAGTAGTATATGATTATTATCATCAAGGCAGTGTTTATTCCATCTTACATGGCAAAAGAGGGGAAGGAAGGAATCGTATAGATTGGTATAGCCGGTTAAGGATTGCGATCGGTACAGCAAGAGGCATTGCTCACATCCATAATCAACAAGGAGGGAAACTAGTTCATGGAAACATAAAAGCTTCAAACATCTTCATCAACTCACAAGGATATGGTTGTGTATCTGACATAGGCTTAACAACATTGATGAGTTCAATACCTTCACCAGGTAATAGAGCAACAGGATATTGTGCGCCAGAAGTAACCGACGCACGTAAAGCAACACATTCGTCTGATGTATACAGTTTTGGTGTCCTATTACTTGAGCTTCTAACTAGGAAAACCCCAATATATTCTTCGGAACGTGGTCAAGCATTTCACTTGGTTAGATGGGTGAAGTCTGTGGTAAGAGAGGAATGGACTTCAGAGGTTTTTGATGTGGAGCTTTTGAAGTATTCAAATATAGAGGAAGAAATGGTGGAGATGCTACAAATAGGGATGGCTTGTGCAGCAAGAAGGTCAGATCAAAGACCAAAAATGGCTGAAGTTGTGAGAATGATAGAAGGGATTCGTCTGGAAAATCGATCGCCGTCTACTGAGACTAGATCAGAAGTTTCTACTACAACTATTTACTCAACCTAA 1056 0.3873 MNLCCSDHAASAKEPVKKCKKKELPMKADSSPSRRDENKIVFFEDCYLAFDLEDLLRASSKILGKGTIGTTYKAALEDVTTVVLKRLKEVTVGKREFEQHMEVVGKIKHENVDALRAYYYSKDEKLVVYDYYHQGSVYSILHGKRGEGRNRIDWYSRLRIAIGTARGIAHIHNQQGGKLVHGNIKASNIFINSQGYGCVSDIGLTTLMSSIPSPGNRATGYCAPEVTDARKATHSSDVYSFGVLLLELLTRKTPIYSSERGQAFHLVRWVKSVVREEWTSEVFDVELLKYSNIEEEMVEMLQIGMACAARRSDQRPKMAEVVRMIEGIRLENRSPSTETRSEVSTTTIYST 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04024 351 Gene3D Phosphorylase Kinase; domain 1 24 131 - -
Trre6g04024 351 Gene3D Transferase(Phosphotransferase) domain 1 133 349 - -
Trre6g04024 351 PANTHER OS05G0588300 PROTEIN 33 333 - -
Trre6g04024 351 FunFam pollen receptor-like kinase 1 26 131 - -
Trre6g04024 351 ProSiteProfiles Protein kinase domain profile. 57 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g04024 351 SUPERFAMILY Protein kinase-like (PK-like) 60 326 IPR011009 -
Trre6g04024 351 Pfam Protein tyrosine and serine/threonine kinase 60 324 IPR001245 GO:0004672|GO:0006468
Trre6g04024 351 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 132 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04024 Trre-Chr6 42381968 42383561 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04024 38 343 Receptor kinase-like Gene Family AT4G23740 63.725 7.82e-145 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre6g04024 PK_Tyr_Ser-Thr 5.6e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04024 - - mtr:25489776 540.036