Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04023 ATGGACAAGAATCTATTTCTCTTGTTCATGTTTTCAGCAGTGTTGATTAGTAGTATTGAAGCTGAACCAATAGAAGATAAACAAGCTTTACTTGATTTCCTTAACAAAATGAATCATTCTCCACATCTTAATTGGGATGAGAATTCTTCTGTATGTCAAACATGGAGAGGAGTTACCTGCAACACTGATGGAACTCGAGTTATCGCGATTCGGTTGCCTGGAGCCGGCTTAACCGGTTCAATTCCACCAAACACTCTCGCTCGTCTTTCGGCTCTCGAGACTGTGAGTCTTAGATTAAATGGTATTACTGGTTTTTTCCCTGATGATTTCTCTCAGCTGAAAAACTTGACTAGTCTTTATCTTCAATCTAACAAGTTTTCTGGACCATTGCCATTGGATTTTTCTGTTTGGAGTAATCTTTCTGTTCTTAATTTGTCCAACAATTCTTTTAATGGTAGCATCCCTTTTTCGATTTCTAATCTAACTCATCTCGGTTCATTAGTCCTTGCGAATAACTCTCTTTCTGGTGAGATTCCTGATCTTAATATTCATAGCCTTCATTTGCTGAATTTAGCAAACAATAACCTTAGTGGTGTTGTGCCGAAATCACTTCTTAGATTTCCGAGTTCGGCTTTTTCTGGTAACAATCTTGCATCAAATACTAGTAGTACACTTCCTCCGGCTTTTCCTATGCATCCACCTTATAATTTTCCACCGAAAAAATCCAAAGGACTAAGTGAAACGGCATTATTGGGAATCATCATCGGTGTTTGCGCACTTGGATTTGCAGTGATTGCAGTTGTCATGATTTTGTGCTGCTATGACTTTGCTTCTTCTGGTGTAAAAGAATCCGTAAAATCGAAGAAAAATGAAGTATCTATGAAAGCAGAATCTTCCGCGAGTCAAGATAAAAACAAAATAGTATTTTTTGAGGATTGTAATCTTGCATTTGATTTAGAGGACCTTTTGAGAGCTTCTGCCGAGATTCTCGGAAAGGGTACATTTGGAACAACATATAAGGCCGCTTTAGAAGATGCAACTACCGTAGCGGTGAAGAGGTTGAAAGAGGTTACTGTCGGGAAAAGGGAATTCGAACAGCAGATGGAAGTGGTTGGGAAAATTAAGCATGAAAATGTGGATACATTAAGAGCTTACTATTATTCAAAGGATGAGAAACTAGTAGTATCTGATTATTATCAACAAGGCAGTGTTTCTTCCATCTTACATGGCAAAAGAGGGGAAGGAAGGACTAATCTAGACTGGGATAGCCGTTTAAAGATTGCAATCGGTACAGCAAGAGGCATCGCTTACATACATACTCAACAAGGAGGGAAACTAGTTCATGGAAACATAAAAGCCTCGAACGTCTTCCTAAACTCACAAGGATACGGCTGTGTATCCGACATAGGTTTGGCAACATTGATGAGTTCAATACCTCCACCAGGCACAAGAGCAATGGGATACCGTGCGCCAGAAGTAACCGACACACGTAAAGCGATGCATCCGTCTGATGTATACAGTTTCGGTGTCCTATTACTTGAACTTCTAACTGGGAAATCCCCCGTATATTCTTCGGAAGGTGAACAAATTGTTCACTTGGTTAGATGGGTGAATTCTGTGGTCAGAGAGGAATGGACTGCAGAGGTTTTCGATGTGGAGCTTTTGCGGTACTCACATGTAGAGGAAGAAATGGTGGAGATGCTACAAATAGGGATGGCTTGTGCAGCAAGAATGCCAGATCAAAGACCAAAAATGTCTGAAGTTGTGAGAATGATGGAAGCAATTCGTCCCGAAAATCGACCATCGTCTACCGAGTCTAGATCCGAAGTTTCTACTCCAACTATTTATGTAACTTAA 1857 0.4023 MDKNLFLLFMFSAVLISSIEAEPIEDKQALLDFLNKMNHSPHLNWDENSSVCQTWRGVTCNTDGTRVIAIRLPGAGLTGSIPPNTLARLSALETVSLRLNGITGFFPDDFSQLKNLTSLYLQSNKFSGPLPLDFSVWSNLSVLNLSNNSFNGSIPFSISNLTHLGSLVLANNSLSGEIPDLNIHSLHLLNLANNNLSGVVPKSLLRFPSSAFSGNNLASNTSSTLPPAFPMHPPYNFPPKKSKGLSETALLGIIIGVCALGFAVIAVVMILCCYDFASSGVKESVKSKKNEVSMKAESSASQDKNKIVFFEDCNLAFDLEDLLRASAEILGKGTFGTTYKAALEDATTVAVKRLKEVTVGKREFEQQMEVVGKIKHENVDTLRAYYYSKDEKLVVSDYYQQGSVSSILHGKRGEGRTNLDWDSRLKIAIGTARGIAYIHTQQGGKLVHGNIKASNVFLNSQGYGCVSDIGLATLMSSIPPPGTRAMGYRAPEVTDTRKAMHPSDVYSFGVLLLELLTGKSPVYSSEGEQIVHLVRWVNSVVREEWTAEVFDVELLRYSHVEEEMVEMLQIGMACAARMPDQRPKMSEVVRMMEAIRPENRPSSTESRSEVSTPTIYVT 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04023 618 ProSiteProfiles Protein kinase domain profile. 324 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g04023 618 MobiDBLite consensus disorder prediction 595 618 - -
Trre6g04023 618 Gene3D Phosphorylase Kinase; domain 1 288 398 - -
Trre6g04023 618 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 399 606 - -
Trre6g04023 618 SUPERFAMILY Protein kinase-like (PK-like) 328 593 IPR011009 -
Trre6g04023 618 Gene3D Transferase(Phosphotransferase) domain 1 399 614 - -
Trre6g04023 618 Gene3D Ribonuclease Inhibitor 25 134 IPR032675 -
Trre6g04023 618 Pfam Leucine rich repeat 80 126 IPR001611 GO:0005515
Trre6g04023 618 MobiDBLite consensus disorder prediction 599 618 - -
Trre6g04023 618 FunFam Probable inactive receptor kinase RLK902 23 182 - -
Trre6g04023 618 PANTHER OS05G0588300 PROTEIN 7 604 - -
Trre6g04023 618 ProSitePatterns Protein kinases ATP-binding region signature. 330 361 IPR017441 GO:0005524
Trre6g04023 618 Gene3D Ribonuclease Inhibitor 135 258 IPR032675 -
Trre6g04023 618 FunFam pollen receptor-like kinase 1 293 398 - -
Trre6g04023 618 Pfam Protein tyrosine and serine/threonine kinase 328 591 IPR001245 GO:0004672|GO:0006468
Trre6g04023 618 Pfam Leucine rich repeat N-terminal domain 25 61 IPR013210 -
Trre6g04023 618 SUPERFAMILY L domain-like 40 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04023 Trre-Chr6 42377371 42379826 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04023 15 614 Receptor kinase-like Gene Family AT4G23740 57.419 0.0 696
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre6g04023 PK_Tyr_Ser-Thr 1.4e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04023 - - gmx:100813065 923.309