Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04018 ATGGTAGCATGCCATACCCTCAAAGCATATGTTAAAGTTGTTGAAGATGAGCTATTTACAGATGCTAAAGATGATTTACAAACCTCTATTGATCAACTTACTACAATTGAATTCAAGAAACTTTCTTCAAAAGAATCTGAGTTACCTGCAGTTATCTCTTTTCAACAAACTTGTGTTGATGGTTTTCCTGAGGGAAAAATGAAGACTAATCTTCAGAATCTTTTTAAGGATTCTAAGGAATTTGTTAGCAATTCACTTGCTATGGTAACTCAGGTTTCCACATTCCTTTCTACGGTTCAAACCCTTGCTTGTGGCTGTTTGTTGCTTTCTAATAACTCTCATGTTGCCTCTTTGGATTCTGAAGGTATTCCTTCATATATCCACGCCGAGGAAAGAAGGGTGTTGAAGGCTGCTGCTGATAATAGATCTACACTTAATGTCACTTTTGCTAAAGATGGTAGTGGTGACTTCAAAACCATCTCCGAAGCTTTAGCCGCCATTCCTAAAACCTATACGGGAAGGTATATGGTTTTTGTTAAAGAAGGAGTATACAACGAGCAAGTGGCAGTAACAAAGAAAATGCAAAATGTAACCATGTATGGTGAGGGATCACAAAAGAGTATCATCACTGGTAGCAAAAACTTCAGGGATGGAGTCAGGACCTTCATAACTGCAAGTTTTATGGTAGAAGGAGATGGATTTTTGGGACTAGCAATGGGATTAGAAACACAGCTGGTCCTGATGGACATCAAGCAGTGGCAGCGAGAGTACAAGCGGATCGCGCTGTGTTTGCCAACTGTCGTTTCAAAGGGAGAGGCAGCAGTTGTATTCCAAAATTGCATCATGATTGATAGAAAACCAATGGACAATCAAGGTAACATGGTGACAGCACAAGGTAGAATGAACAAACAACAAACAACAGGGATTATTCAATATTAG 939 0.393 MVACHTLKAYVKVVEDELFTDAKDDLQTSIDQLTTIEFKKLSSKESELPAVISFQQTCVDGFPEGKMKTNLQNLFKDSKEFVSNSLAMVTQVSTFLSTVQTLACGCLLLSNNSHVASLDSEGIPSYIHAEERRVLKAAADNRSTLNVTFAKDGSGDFKTISEALAAIPKTYTGRYMVFVKEGVYNEQVAVTKKMQNVTMYGEGSQKSIITGSKNFRDGVRTFITASFMVEGDGFLGLAMGLETQLVLMDIKQWQREYKRIALCLPTVVSKGEAAVVFQNCIMIDRKPMDNQGNMVTAQGRMNKQQTTGIIQY 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04018 312 SUPERFAMILY Pectin lyase-like 144 309 IPR011050 -
Trre6g04018 312 Gene3D - 141 244 IPR012334 -
Trre6g04018 312 PANTHER PECTINESTERASE 271 310 - -
Trre6g04018 312 Pfam Pectinesterase 271 310 IPR000070 GO:0030599|GO:0042545
Trre6g04018 312 Pfam Pectinesterase 146 242 IPR000070 GO:0030599|GO:0042545
Trre6g04018 312 Gene3D Invertase/pectin methylesterase inhibitor family protein 15 93 IPR035513 -
Trre6g04018 312 CDD PMEI-like_3 12 94 - -
Trre6g04018 312 Pfam Plant invertase/pectin methylesterase inhibitor 17 88 IPR006501 GO:0004857
Trre6g04018 312 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 17 92 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04018 Trre-Chr6 42355106 42356461 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04018 18 310 Carbohydrate Esterase AT4G33230 39.077 4.68e-66 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04018 - - gmx:100784679 342.043