Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04009 ATGTCAAACAATGCATTCAATTTTCTTATCTTGTTTCTCACTTTCTCTTTGTTTCCATTAAATTATTCTCTTAACCAAGAAGGTCTCTCTCTACTTTCATGGCTTTCATCTTTCAATTCTTCAAACTCTCTCACTACTACTACAAGCTTCTCATCATGGGATCCATCTCACAAAAATCCTTGCAGATGGGACTATATAAAATGTTCTTCAGAAGAGTTTGTCGAAGAGATCGTAATAACATCGGTTGATCTTCGTAGCCGATTCCCTACACAGTTACTTTCTTTTAACCACCTTACAGCTCTTGTAATCTCGAATGGAAATCTTACTGGTGAGATTCCAAGTTCAGTTGGAAACTTATCATCTTTGGTTACTCTTGATCTTAGTTTCAACACTTTAACAGGAAAAATACCAGAAGAAATAGGAAAGTTATCTGAACTGAGATGGTTATCTTTGAATTCGAACTCGTTACACGGTGGAATTCCAACTACAATTGGTAACTGTTCAAAGCTTCAGCAATTAACACTGTTTGACAATCAGCTTTCCGGTATGATTCCGGGAGAAATAGGACAGTTGAAGAATCTTGAATCGCTGAGAGCTGGCGGAAACCAAGGTATTTTCGGCGAAATTCCAATGCAGATATCAGATTGTAAGGCTTTGGTTTTTCTTGGACTTGCAGTTACTGGAATTTCTGGTGAGATTCCAGCAAGTATAGGAGAACTTCAAAATCTGAAGACACTTTCGGTTTACACAGCACATCTCACAGGTGAAATTCCACCAGAGATTCATAACTGTTCATCATTGGAAGATTTGTTTCTGTATGAAAATCAGCTTTCTGGAAAAATTCCTTATGAATTAGGCTTCATGAAAAGCCTCAAGAGAGTATTGCTATGGCAGAACAATTTAACTGGAACCATTCCAGAAAGTCTTGGAAACTGTACAAATTTGAAGGTTATTGATTTCTCTTTGAATTCTCTCATTGGTCAATTACCTTTGACTCTCAGTAATCTACTCTTATTAGAGGAGTTTCTTTTGTCTGATAATAATATTTATGGAGAAATACCTTCATATATTGGAAATTTTTCCATGTTGAAGCAACTTGAATTAGATAATAACAAATTCTCTGGTGAGATTCCATCTGTTATGGGGAACTTGAAGGAACTAACTCTCTTCTTTGCATGGCAGAATCAACTAAATGGAAGTATACCGATAGAATTATCTAACTGTGAGAAACTTGAAGCGATTGATCTTTCGCACAATTTCCTGACGGGTCCAATTCCAAATTCTCTCTTTCATCTACAGAATTTAACTCAGTTGTTGCTGATATCAAACAGATTTTCAGGTCAAATTCCACCGGATATCGGAAGGTGCACCGGCTTGATCAGGTTAAGGCTAGGATCGAACAACTTTACCGGTCAAATTCCGCGAGAAATAGGCCTTTTGGAAACTTTAACCTTTCTAGAATTGTCAGATAATCAACTCAGTGGAGATATACCTTATGAGATAGGTAACTGTGCTAATTTAGAAATGCTTGACTTGCACAAAAATGAGCTTCAAGGAACCATTCCTTCCTCGTTAAAATTCTTAGACGGTCTCAATGTCTTGGATCTTTCGGCAAACAGAATCACTGGAAGCATTCCTAGGATTTTTGGCGAGCTTACATCGTTAAATAAGTTGATTCTAAGTGGAAACCTTATCACCGGTTCGATCCCTCAATCACTAGGACTTTGTAAGGATTTGCAGTTGTTGGATTTAAGTAACAATAAGATCATAGGTTCTATTCCCAATGAGATTGGTTACTTGCAAGGATTGGATATTCTCTTGAACTTGAGTTGGAACTCTCTTACTGGTCCCATACCAAAGACTTTCTCAAATCTCTCAAAACTTTCAATCTTGGACCTATCTTACAACAACCTCAAAGGTAGTCTCATAGCACTTGGTAATCTTGACAATCTTGTGTCTCTAAATGTTTCTTACAATAGTTTTTCTGGTACACTTCCTGACACAAAGTTCTTCCAAGAACTACCTTCTGCTGCGTTTGCTGGTAACCCTGATCTTTGCATTAACAAGTGCCATGTAAGTGGAAATCTCCGAGGAAACAAGTCGTTAAGAAATATTATCATCTACACTTTCCTTGGTGTTATTTTAACTTCTGCTATTGTCACTTGTGGAGTTATTTTAGCATTAAGGATTCAAGGGGATAGTTTTTATGGGAATAATAGTTTTGAAGAAGTTGAAATGGAATGGTCTTTCACTCCATTCCAAAAACTTAACTTCAACATCAATGACATTCTCACAAAATTGTCGGATTCAAACATTGTCGGAAAGGGTGGCTCGGGAGTTGTTTATCGCGTAGAGACTCCAACAAGACAGGTTATTGCAGTGAAGAAGCTATGGCCAATAAAGAATGAAGAAACACCAGAAAGAGATATGTTCACAGCAGAAGTTCAGACACTTGGATCAATAAGGCATAAGAATATAGTGAGACTTTTAGGATGCTGCGAAAATGGAAAAACAAAATTGCTCTTGTTTGATTACATAAGTAATGGTAGTTTGTTTGGATTGCTACATGAAAATAGATTGTTCTTGGATTGGGATGCAAGGTATAAGATCATACTTGGAACAGCTCATGGTTTAGAATATCTTCATCATGATTGTATCCCTCCGATTGTCCATCGCGATGTTAAGGCTAACAACATCTTGGTAGGTCCACAGTTTGAAGCTTTTCTCGCAGATTTTGGTCTTGCAAAATTGGTCATTTCCTCAGAGTGTTCAAGAGCCTCACATGTAGTTGCAGGTTCTTGTGGATACATAGCTCCTGAATATGGATACAGTTTAAGGATCACAGAGAAGAGTGATGTATACAGTTACGGCGTTGTGCTTCTCGAGATGTTAACTGGAATGGAACCAACGGATAACAGGATTCCCGAAGGTGCTCACATAGTAACATGGGTTATGAGTGAAATCAGAGAGAAGAAAAGAGAATTTGCATCTATTCTTGATCAGCAATTAGCAGTGCAGTGTGGAACAAGAACACCAGAGATGCTTCAAGTGCTAGGTGTAGCAATTCTATGTGTGAATCCATCACCAGAAGAAAGACCAACAATGAAAGATGTAACAGCAATGCTGAAGGAGATTAGGCATGGAAATGAAGATTTGGATAAACCAAATATGATCCATAAAGGCAACATGGTTATTACCAATCCAAAAGCAGCAGTTCATTGCTCAAGTTTCTCAAGATCATGTGAACTTTTGATGGAGTCATCATCTTCTTCATAG 3276 0.3767 MSNNAFNFLILFLTFSLFPLNYSLNQEGLSLLSWLSSFNSSNSLTTTTSFSSWDPSHKNPCRWDYIKCSSEEFVEEIVITSVDLRSRFPTQLLSFNHLTALVISNGNLTGEIPSSVGNLSSLVTLDLSFNTLTGKIPEEIGKLSELRWLSLNSNSLHGGIPTTIGNCSKLQQLTLFDNQLSGMIPGEIGQLKNLESLRAGGNQGIFGEIPMQISDCKALVFLGLAVTGISGEIPASIGELQNLKTLSVYTAHLTGEIPPEIHNCSSLEDLFLYENQLSGKIPYELGFMKSLKRVLLWQNNLTGTIPESLGNCTNLKVIDFSLNSLIGQLPLTLSNLLLLEEFLLSDNNIYGEIPSYIGNFSMLKQLELDNNKFSGEIPSVMGNLKELTLFFAWQNQLNGSIPIELSNCEKLEAIDLSHNFLTGPIPNSLFHLQNLTQLLLISNRFSGQIPPDIGRCTGLIRLRLGSNNFTGQIPREIGLLETLTFLELSDNQLSGDIPYEIGNCANLEMLDLHKNELQGTIPSSLKFLDGLNVLDLSANRITGSIPRIFGELTSLNKLILSGNLITGSIPQSLGLCKDLQLLDLSNNKIIGSIPNEIGYLQGLDILLNLSWNSLTGPIPKTFSNLSKLSILDLSYNNLKGSLIALGNLDNLVSLNVSYNSFSGTLPDTKFFQELPSAAFAGNPDLCINKCHVSGNLRGNKSLRNIIIYTFLGVILTSAIVTCGVILALRIQGDSFYGNNSFEEVEMEWSFTPFQKLNFNINDILTKLSDSNIVGKGGSGVVYRVETPTRQVIAVKKLWPIKNEETPERDMFTAEVQTLGSIRHKNIVRLLGCCENGKTKLLLFDYISNGSLFGLLHENRLFLDWDARYKIILGTAHGLEYLHHDCIPPIVHRDVKANNILVGPQFEAFLADFGLAKLVISSECSRASHVVAGSCGYIAPEYGYSLRITEKSDVYSYGVVLLEMLTGMEPTDNRIPEGAHIVTWVMSEIREKKREFASILDQQLAVQCGTRTPEMLQVLGVAILCVNPSPEERPTMKDVTAMLKEIRHGNEDLDKPNMIHKGNMVITNPKAAVHCSSFSRSCELLMESSSSS 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04009 1091 SUPERFAMILY Protein kinase-like (PK-like) 763 1071 IPR011009 -
Trre6g04009 1091 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 743 845 - -
Trre6g04009 1091 SMART LRR_typ_2 528 551 IPR003591 -
Trre6g04009 1091 SMART LRR_typ_2 336 360 IPR003591 -
Trre6g04009 1091 SMART LRR_typ_2 480 504 IPR003591 -
Trre6g04009 1091 SMART LRR_typ_2 432 456 IPR003591 -
Trre6g04009 1091 SMART LRR_typ_2 119 142 IPR003591 -
Trre6g04009 1091 SMART LRR_typ_2 143 167 IPR003591 -
Trre6g04009 1091 SMART LRR_typ_2 552 576 IPR003591 -
Trre6g04009 1091 SMART LRR_typ_2 288 312 IPR003591 -
Trre6g04009 1091 SMART LRR_typ_2 648 681 IPR003591 -
Trre6g04009 1091 SMART LRR_typ_2 625 647 IPR003591 -
Trre6g04009 1091 ProSitePatterns Protein kinases ATP-binding region signature. 773 801 IPR017441 GO:0005524
Trre6g04009 1091 SUPERFAMILY RNI-like 296 666 - -
Trre6g04009 1091 SUPERFAMILY RNI-like 81 398 - -
Trre6g04009 1091 Pfam Leucine rich repeat N-terminal domain 25 69 IPR013210 -
Trre6g04009 1091 Pfam Leucine Rich Repeat 410 432 IPR001611 GO:0005515
Trre6g04009 1091 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 846 1060 - -
Trre6g04009 1091 Gene3D Ribonuclease Inhibitor 399 693 IPR032675 -
Trre6g04009 1091 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 24 202 - -
Trre6g04009 1091 ProSiteProfiles Protein kinase domain profile. 767 1045 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g04009 1091 Gene3D Ribonuclease Inhibitor 188 398 IPR032675 -
Trre6g04009 1091 PRINTS Leucine-rich repeat signature 625 638 - -
Trre6g04009 1091 PRINTS Leucine-rich repeat signature 531 544 - -
Trre6g04009 1091 ProSiteProfiles Leucine-rich repeat profile. 578 600 IPR001611 GO:0005515
Trre6g04009 1091 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 203 328 - -
Trre6g04009 1091 ProSitePatterns Serine/Threonine protein kinases active-site signature. 889 901 IPR008271 GO:0004672|GO:0006468
Trre6g04009 1091 Gene3D Transferase(Phosphotransferase) domain 1 846 1064 - -
Trre6g04009 1091 Gene3D Phosphorylase Kinase; domain 1 737 845 - -
Trre6g04009 1091 Pfam Protein kinase domain 770 1039 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g04009 1091 Gene3D Ribonuclease Inhibitor 24 187 IPR032675 -
Trre6g04009 1091 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 311 1044 - -
Trre6g04009 1091 Pfam Leucine rich repeat 97 156 IPR001611 GO:0005515
Trre6g04009 1091 Pfam Leucine rich repeat 506 565 IPR001611 GO:0005515
Trre6g04009 1091 Pfam Leucine rich repeat 607 660 IPR001611 GO:0005515
Trre6g04009 1091 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 410 694 - -
Trre6g04009 1091 SMART serkin_6 767 1042 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04009 Trre-Chr6 42251392 42255009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04009 22 1082 Receptor kinase-like Gene Family AT5G56040 47.194 0.0 923
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre6g04009 Pkinase 3.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04009 - - gmx:100807225 1693.32