Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04001 ATGGGGAAGGTAACGGTTCCATTTATAGGGATGATAATTGCAGAGTGTGTTCAAGTTGCTTTAATCATATTAAGTAAACAAGTTATGTCACAAGGAATGACAAGTTTCATATTCATTTTCTATTCAAATTCAATCGCTGCTTTTGTTCTTCTTCCTTCTTCCTTCTTCATCCATAGATTTCAACGTCCTCCAATCACTTTTTCAACTCTTTCTGCTTTCTTCATACTTGGATTACTTGGTTATTTTGCGCAGGTTTTTGGATATGCTGGGATTAATTACAGCTCATCAACACTTGCTACTGCTATGCTTAATCTTGTTCCTGGTTTTACCTTCATCCTTGCTGTTCTTTTTAGAATGGAACAGTTGGATTGGAGAAGCTCTAGCAGCTTAGCTAAATCATTGGGAACAATAGTATCAATTGCTGGTGCTTTTATTGCGACTTTATACAAGGGTGTTGCAATTCTGAAGGGTCCATCACCTGCAAACTTATCTCAGCAGCCACTTTTCTCACAAGATTTTAATTGGATACTCGGAGGATTATTTCTTGCAGCTGATTGTGTGATGGCTTCAGCATTTCTTATAGTACAGGCTTCTATTCTTAAGAAATATCCAGCAGGGTTGATTGTTGTATTCTTTTATTGTTTCTTTGTTGCCATTCTCTCTGGTGTGACCTGTTTGGTTGTCGAAAGAGACATCAGTGCTTGGAGCTTGGAACCTAAGCTAAGGTTGCTATCCGTTTTATACTCGGGAATCTTTGGTTCTGCAGTTCAAGTTGGTGTTACTACTTGGTGTTTGCACCAGACAGGACCTGTTTTTGTTTCCATGTTCAAGCCCATAGGAATTGTCATATCGGTAGTTATAAGTGTTGTTTTCCTTGGCGATGCATTCTATCTTGGAAGTTTGATTGGTGCTACTGTGATTGTTATTGGGTTTTATTCCGTATTGTGGGGGAAATCCAAAGATATTGAAGCCAGAAGCTTGGAATCAAGCGGCAACCAGACCCCCCTTTTGAAGGAAAACATCAGTGAAGACATATGA 1038 0.3902 MGKVTVPFIGMIIAECVQVALIILSKQVMSQGMTSFIFIFYSNSIAAFVLLPSSFFIHRFQRPPITFSTLSAFFILGLLGYFAQVFGYAGINYSSSTLATAMLNLVPGFTFILAVLFRMEQLDWRSSSSLAKSLGTIVSIAGAFIATLYKGVAILKGPSPANLSQQPLFSQDFNWILGGLFLAADCVMASAFLIVQASILKKYPAGLIVVFFYCFFVAILSGVTCLVVERDISAWSLEPKLRLLSVLYSGIFGSAVQVGVTTWCLHQTGPVFVSMFKPIGIVISVVISVVFLGDAFYLGSLIGATVIVIGFYSVLWGKSKDIEARSLESSGNQTPLLKENISEDI 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04001 345 SUPERFAMILY Multidrug resistance efflux transporter EmrE 46 148 - -
Trre6g04001 345 Pfam EamA-like transporter family 180 315 IPR000620 GO:0016020
Trre6g04001 345 Pfam EamA-like transporter family 10 145 IPR000620 GO:0016020
Trre6g04001 345 SUPERFAMILY Multidrug resistance efflux transporter EmrE 223 319 - -
Trre6g04001 345 PANTHER WAT1-RELATED PROTEIN 6 322 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04001 Trre-Chr6 42207776 42211445 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04001 3 333 Nodulin-like Gene Family AT3G28050 45.210 1.26e-89 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04001 - - gmx:100804932 538.495