Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03995 ATGGAAAAGTGTTGGTTTTTTGGGGTGTTCATTGTGGTGGGCTATGGGTGCTTCCTAGGTGACATTGTTGGGGTAGAAGGGTACCCAAATGAGGATTTGATTATGAAGTTGCCAGGCCAACCTAAGGTTGAATTCAGTCAATATGCTGGTTATGTTGATATTGATGTAAAACATGGAAGGAGTCTCTTCTACTATTTTGTTGAGGCTGACCAATACCATGATAAAAAGCCCCTCACACTTTGGCTCAATGGAGGTCCAGGTTGTTCCTCAATTGGAGGAGGTGCCTTTACTGAATTAGGTCCGTTTTATTCTACCGGAGATGGACGCGGTTTACAAAGAAATTCAAATTCTTGGAATAAAGTTTCTAATCTCCTTTTTGTGGAGTCTCCAATCGGAATTGGTTGGTCATACTCAAATATAACTTCTGATTATAATAACTATGATGATGCCTCCACAGCCAATGATATGCTTTTGTTCATGATAAAATGGTACGAGAAATTTCTGTTAATCACATCCTATACCTGTGTGCCGGAATTTCAATTTCCTTCATACAAATCAAGAAAGTTGTTTCTTACCGGAGAAAGCTATGCAGGTCATTTCATACCTCAATTAGCCAATATTCTTCTTGATTATAATTCTCATTCAACTACTTTCAAATTCAATATAAAAGGAGTCGCTATTGGAAACCCACTTCTAAAATTGGATCGTGATACACAAGCAATATATGAATATTTTTGGTCACATGGAATGATTTCAGATGAAATTGGCCTTGCCATTATGAATTATTGCAATTATAATGCAACTGATCGTGATAACTTAACTAAATCATGCAATGATGCTATGCTTGATGCTCAAGATATTGTGGGTGACTATATAGATAGTTATGATGTGATTCTTGATGTTTGTTATCCATCCATAGCTGAACAAGAACTAAGATTGAAAAAAATGGCTACTAAAATAAGCTTGAGTGTAGATGTTTGTATGGATTCTGAAATATATTTTTACCTCAACCTTCCGGAGGTTCAAAAAGCTCTTCATGCTAACCGTACTAATCTGTCATACCCATGGTCCATGTGCAGTGATGTTTTAAATTACAACAATGCAGATCATGAAATTAATATGCTTCCGGTTCTAAAACGTATAGTTCAAAATCATATTCCAGTATGGGTTTATAGTGGAGACCAAGATTCTGTTGTGCCATTACTAGGTTCTCGAACACTCATTCGTGAACTAGCTCTTGATTTGAATTTCAACATTACAGACCCATATAGAGTTTGGTTCCACAAAGGGCAGGTTGGAGGTTGGGTGACTGAGTACGGAAATTTGTTGACTTTTGTCACCGTAAGAGGAGCAGGCCATATGGTATCATATGGACAACCTTCTAGAGCATTGGATCTATTTAGTTCATTTGTGAGTGGGACAAAATTGCCAAATACATCCCGATTATGA 1449 0.372 MEKCWFFGVFIVVGYGCFLGDIVGVEGYPNEDLIMKLPGQPKVEFSQYAGYVDIDVKHGRSLFYYFVEADQYHDKKPLTLWLNGGPGCSSIGGGAFTELGPFYSTGDGRGLQRNSNSWNKVSNLLFVESPIGIGWSYSNITSDYNNYDDASTANDMLLFMIKWYEKFLLITSYTCVPEFQFPSYKSRKLFLTGESYAGHFIPQLANILLDYNSHSTTFKFNIKGVAIGNPLLKLDRDTQAIYEYFWSHGMISDEIGLAIMNYCNYNATDRDNLTKSCNDAMLDAQDIVGDYIDSYDVILDVCYPSIAEQELRLKKMATKISLSVDVCMDSEIYFYLNLPEVQKALHANRTNLSYPWSMCSDVLNYNNADHEINMLPVLKRIVQNHIPVWVYSGDQDSVVPLLGSRTLIRELALDLNFNITDPYRVWFHKGQVGGWVTEYGNLLTFVTVRGAGHMVSYGQPSRALDLFSSFVSGTKLPNTSRL 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03995 482 Gene3D alpha/beta hydrolase 29 303 IPR029058 -
Trre6g03995 482 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 35 459 IPR001563 GO:0004185|GO:0006508
Trre6g03995 482 ProSitePatterns Serine carboxypeptidases, serine active site. 191 198 IPR018202 GO:0004185
Trre6g03995 482 Pfam Serine carboxypeptidase 39 473 IPR001563 GO:0004185|GO:0006508
Trre6g03995 482 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Trre6g03995 482 SUPERFAMILY alpha/beta-Hydrolases 36 476 IPR029058 -
Trre6g03995 482 PRINTS Carboxypeptidase C serine protease (S10) family signature 114 126 IPR001563 GO:0004185|GO:0006508
Trre6g03995 482 PRINTS Carboxypeptidase C serine protease (S10) family signature 443 456 IPR001563 GO:0004185|GO:0006508
Trre6g03995 482 PRINTS Carboxypeptidase C serine protease (S10) family signature 177 202 IPR001563 GO:0004185|GO:0006508
Trre6g03995 482 PRINTS Carboxypeptidase C serine protease (S10) family signature 127 137 IPR001563 GO:0004185|GO:0006508
Trre6g03995 482 Gene3D - 327 363 - -
Trre6g03995 482 FunFam Carboxypeptidase 324 476 - -
Trre6g03995 482 FunFam Carboxypeptidase 28 304 - -
Trre6g03995 482 Gene3D - 374 473 - -
Trre6g03995 482 FunFam Carboxypeptidase 374 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03995 Trre-Chr6 42164035 42175560 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03995 334 476 Calmodulin-binding Proteins AT2G22960 29.371 3.97e-15 72.0