Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03994 ATGGAAAAGTGTTGGTTTTTTGGGGTGTTCATTGTGGTGGGCTATGGGTGCTTCCTAGGTGACATTGTTGGGGTAGAAGGGTACCCAAATGAGGATTTGATTATGAAGTTGCCAGGCCAACCTAAGGTTGAATTCAGTCAATATGCTGGTTATGTTGATATTGATGTAAAACATGGAAGGAGTCTCTTCTACTATTTTGTTGAGGCTGACCAATACCATGATAAAAAGCCCCTCACACTTTGGCTCAATGGAGGTCCAGGTTGTTCCTCAATTGGAGGAGGTGCCTTTACTGAATTAGGTCCGTTTTATTCTACCGGAGATGGACGCGGTTTACAAAGAAATTCAAATTCTTGGAATAAAGTTTCTAATCTCCTTTTTGTGGAGTCTCCAATCGGAATTGGTTGGTCATACTCAAATATAACTTCTGATTATAATAACTATGATGATGCCTCCACAGCCAATGATATGCTTTTGTTCATGATAAAATGGTACGAGAAATTTCTGTTAATTGAATGTTCCAACATCGTATTCAACATCTCAAGTGTTGGAACATTACATAGCACATCCTATACCTGTGTGCCGGAATTTCAATTTCCTTCATACAAATCAAGAAAGTTGTTTCTTACCGGAGAAAGCTATGCAGGTCATTTCATACCTCAATTAGCCAATATTCTTCTTGATTATAATTCTCATTCAACTACTTTCAAATTCAATATAAAAGGAGTCGCTATTGGAAACCCACTTCTAAAATTGGATCGTGATACACAAGCAATATATGAATATTTTTGGTCACATGGAATGATTTCAGATGAAATTGGCCTTGCCATTATGAATTATTGCAATTATAATGCAACTGATCGTGATAACTTAACTAAATCATGCAATGATGCTATGCTTGATGCTCAAGATATTGTGGGTGACTATATAGATAGTTATGATGTGATTCTTGATGTTTGTTATCCATCCATAGCTGAACAAGAACTAAGATTGAAAAAAATGGCTACTAAAATAAGCTTGAGTGTAGATGTTTGTATGGATTCTGAAATATATTTTTACCTCAACCTTCCGGAGGTTCAAAAAGCTCTTCATGCTAACCGTACTAATCTGTCATACCCATGGTCCATGTGCAGTGATGTTTTAAATTACAACAATGCAGATCATGAAATTAATATGCTTCCGGTTCTAAAACGTATAGTTCAAAATCATATTCCAGTATGGGTTTATAGTGGAGACCAAGATTCTGTTGTGCCATTACTAGGTTCTCGAACACTCATTCGTGAACTAGCTCTTGATTTGAATTTCAACATTACAGACCCATATAGAGTTTGGTTCCACAAAGGGCAGGTTGGAGGTTGGGTGACTGAGTACGGAAATTTGTTGACTTTTGTCACCGTAAGAGGAGCAGGCCATATGGTATCATATGGACAACCTTCTAGAGCATTGGATCTATTTAGTTCATTTGTGAGTGGGACAAAATTGCCAAATACATCCCGATTATGA 1500 0.3713 MEKCWFFGVFIVVGYGCFLGDIVGVEGYPNEDLIMKLPGQPKVEFSQYAGYVDIDVKHGRSLFYYFVEADQYHDKKPLTLWLNGGPGCSSIGGGAFTELGPFYSTGDGRGLQRNSNSWNKVSNLLFVESPIGIGWSYSNITSDYNNYDDASTANDMLLFMIKWYEKFLLIECSNIVFNISSVGTLHSTSYTCVPEFQFPSYKSRKLFLTGESYAGHFIPQLANILLDYNSHSTTFKFNIKGVAIGNPLLKLDRDTQAIYEYFWSHGMISDEIGLAIMNYCNYNATDRDNLTKSCNDAMLDAQDIVGDYIDSYDVILDVCYPSIAEQELRLKKMATKISLSVDVCMDSEIYFYLNLPEVQKALHANRTNLSYPWSMCSDVLNYNNADHEINMLPVLKRIVQNHIPVWVYSGDQDSVVPLLGSRTLIRELALDLNFNITDPYRVWFHKGQVGGWVTEYGNLLTFVTVRGAGHMVSYGQPSRALDLFSSFVSGTKLPNTSRL 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03994 499 ProSitePatterns Serine carboxypeptidases, serine active site. 208 215 IPR018202 GO:0004185
Trre6g03994 499 Pfam Serine carboxypeptidase 39 167 IPR001563 GO:0004185|GO:0006508
Trre6g03994 499 Pfam Serine carboxypeptidase 197 490 IPR001563 GO:0004185|GO:0006508
Trre6g03994 499 FunFam Carboxypeptidase 28 183 - -
Trre6g03994 499 FunFam Carboxypeptidase 391 490 - -
Trre6g03994 499 Gene3D - 391 490 - -
Trre6g03994 499 PRINTS Carboxypeptidase C serine protease (S10) family signature 194 219 IPR001563 GO:0004185|GO:0006508
Trre6g03994 499 PRINTS Carboxypeptidase C serine protease (S10) family signature 460 473 IPR001563 GO:0004185|GO:0006508
Trre6g03994 499 PRINTS Carboxypeptidase C serine protease (S10) family signature 114 126 IPR001563 GO:0004185|GO:0006508
Trre6g03994 499 PRINTS Carboxypeptidase C serine protease (S10) family signature 127 137 IPR001563 GO:0004185|GO:0006508
Trre6g03994 499 FunFam Carboxypeptidase 341 493 - -
Trre6g03994 499 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Trre6g03994 499 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 35 476 IPR001563 GO:0004185|GO:0006508
Trre6g03994 499 Gene3D - 344 380 - -
Trre6g03994 499 Gene3D alpha/beta hydrolase 29 320 IPR029058 -
Trre6g03994 499 SUPERFAMILY alpha/beta-Hydrolases 26 495 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03994 Trre-Chr6 42164035 42175560 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03994 351 493 Calmodulin-binding Proteins AT2G22960 29.371 4.28e-15 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03994 K16297 - gmx:100803335 735.717