Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03989 ATGAAGAAGTGTTGGTTTGTTGAAGTGTTGATTGTGTTGAGTTTTTTGGGTACACAAATTGGGGTTGAAGGGTACCCAATTGAGGATCTAGTTGTGAGACTACCTGGCCAACCTAAGGTTGAATTCAAGCAATATGCTGGCTATGTTGATGTTGATGTAAAACATGGGAGGAACCTCTTCTACTATTTTGTTGAGGCTGACCATGACCCTCACAAAAAGCCCCTCACGCTTTGGCTCAATGGAGGTCCAGGATGTTCTTCAATTGGAGGAGGTGCTTTTACTGAATTGGGTCCGTTTTATCCTACCGGTGATGCACGTAGTCTACGAAGAAATTCAGAGTCTTGGAATAGAGCTTCCAATCTCCTCTTTGTGGAGTCTCCTGCTGGAGTTGGTTGGTCATATTCAAACACAACTTCCGATTATAACACTGGTGATGCCTCCACAGCCAATGATATGCTTTTGTTCTTTCTGAAATGGTATGAGAAGTTTCCTTCATACAGATCAAGGAAGTTGTTTCTTACTGGAGAAAGCTATGCAGGACACTACATTCCTCAATTAGCCAATGCTATTCTTGATTATAATGCTCATTCAACCAATTTCAAGTTCAATTTAAAAGGACTCGCTATTGGAAACCCACTTCTGAATTTAGATCGTGATGCACAAGCAACATATGAATATTTTTGGTCACACGGAATGATTTCTGATGAAATTGACCTTACCATTAAGAACGTTTGTGATTTCGACGATTATACCGATTTCGGTTCTCATAACGTATCCAAATCATGCGACAAAGCCCTAAACGAGACTGATAAAATTGTGAGCGATTACATAAACAACTACGATGTGATGCTCGACGTTTGTTATCCGGCCATAGCTGAACAACAAATCATATTGAGAAAAATGACTACTAAAATAAGTTTAAGCGTAGATGTTTGTATGGAATATGAAAGGGATTTCTACCTTAACCTCCCAGAAGTTCAAAAGGCTCTCCATGCCAATCGTACCAATCTTCCATATGCATGGTCTATGTGTAGTAATAATACTTTAAATTATAGTGAACCTGATGTCAAGATTAATATTCTTCCAATTCTTAAACGAATAGTTCAAAATCATATTCCGGTATTGGTTTACAGTGGAGACCAAGATTCGGTTGTACCATTACTAGGTTCTCGAACACTCATTCGCGAACTAGCCCATGACCTTAAATTCAAGATTACTGACCCATATAGAGTTTGGTTCCACAAAGGCCAGGTTGGAGGTTGGGTAACTGAATATGGAAACTTGTTGACGTTTGCCACTGTAAGAGGAGCAGGTCATATGGTACCATATGGACAACCATCTAGAGCATTGCATTTATTTAGTTCCTTTGTGCTTAACAAGAGACTTCCAAACACTACCCGACCTTCAATTGGAAATTGA 1419 0.3946 MKKCWFVEVLIVLSFLGTQIGVEGYPIEDLVVRLPGQPKVEFKQYAGYVDVDVKHGRNLFYYFVEADHDPHKKPLTLWLNGGPGCSSIGGGAFTELGPFYPTGDARSLRRNSESWNRASNLLFVESPAGVGWSYSNTTSDYNTGDASTANDMLLFFLKWYEKFPSYRSRKLFLTGESYAGHYIPQLANAILDYNAHSTNFKFNLKGLAIGNPLLNLDRDAQATYEYFWSHGMISDEIDLTIKNVCDFDDYTDFGSHNVSKSCDKALNETDKIVSDYINNYDVMLDVCYPAIAEQQIILRKMTTKISLSVDVCMEYERDFYLNLPEVQKALHANRTNLPYAWSMCSNNTLNYSEPDVKINILPILKRIVQNHIPVLVYSGDQDSVVPLLGSRTLIRELAHDLKFKITDPYRVWFHKGQVGGWVTEYGNLLTFATVRGAGHMVPYGQPSRALHLFSSFVLNKRLPNTTRPSIGN 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03989 472 ProSitePatterns Serine carboxypeptidases, histidine active site. 429 446 IPR033124 GO:0004185
Trre6g03989 472 Pfam Serine carboxypeptidase 36 458 IPR001563 GO:0004185|GO:0006508
Trre6g03989 472 FunFam Carboxypeptidase 360 459 - -
Trre6g03989 472 Gene3D - 360 458 - -
Trre6g03989 472 PRINTS Carboxypeptidase C serine protease (S10) family signature 159 184 IPR001563 GO:0004185|GO:0006508
Trre6g03989 472 PRINTS Carboxypeptidase C serine protease (S10) family signature 429 442 IPR001563 GO:0004185|GO:0006508
Trre6g03989 472 PRINTS Carboxypeptidase C serine protease (S10) family signature 111 123 IPR001563 GO:0004185|GO:0006508
Trre6g03989 472 PRINTS Carboxypeptidase C serine protease (S10) family signature 124 134 IPR001563 GO:0004185|GO:0006508
Trre6g03989 472 ProSitePatterns Serine carboxypeptidases, serine active site. 173 180 IPR018202 GO:0004185
Trre6g03989 472 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 31 446 IPR001563 GO:0004185|GO:0006508
Trre6g03989 472 Gene3D alpha/beta hydrolase 27 288 IPR029058 -
Trre6g03989 472 FunFam Carboxypeptidase 25 289 - -
Trre6g03989 472 Gene3D - 312 348 - -
Trre6g03989 472 SUPERFAMILY alpha/beta-Hydrolases 23 466 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03989 Trre-Chr6 42057093 42063889 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03989 319 462 Calmodulin-binding Proteins AT2G22960 29.167 2.46e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03989 K16297 - gmx:100815723 796.964