Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03988 ATGGGAGTTATTAGAATGAAGAAGTGTTGGTTTGTTGAAGTGTTGATTGTGTTGAGTTTTTTGGGTACACAAATTGGGGTTGAAGGGTACCCAATTGAGGATCTAGTTGTGAGACTACCTGGCCAACCTAAGGTTGAATTCAAGCAATATGCTGGCTATGTTGATGTTGATGTAAAACATGGGAGGAACCTCTTCTACTATTTTGTTGAGGCTGACCATGACCCTCACAAAAAGCCCCTCACGCTTTGGCTCAATGGAGGTCCAGGATGTTCTTCAATTGGAGGAGGTGCTTTTACTGAATTGGGTCCGTTTTATCCTACCGGTGATGCACGTAGTCTACGAAGAAATTCAGAGTCTTGGAATAGAGCTTCCAATCTCCTCTTTGTGGAGTCTCCTGCTGGAGTTGGTTGGTCATATTCAAACACAACTTCCGATTATAACACTGGTGATGCCTCCACAGCCAATGATATGCTTTTGTTCTTTCTGAAATGGTATGAGAAGTTTCCTTCATACAGATCAAGGAAGTTGTTTCTTACTGGAGAAAGCTATGCAGGACACTACATTCCTCAATTAGCCAATGCTATTCTTGATTATAATGCTCATTCAACCAATTTCAAGTTCAATTTAAAAGGACTCGCTATTGGAAACCCACTTCTGAATTTAGATCGTGATGCACAAGCAACATATGAATATTTTTGGTCACACGGAATGATTTCTGATGAAATTGACCTTACCATTAAGAACGTTTGTGATTTCGACGATTATACCGATTTCGGTTCTCATAACGTATCCAAATCATGCGACAAAGCCCTAAACGAGACTGATAAAATTGTGAGCGATTACATAAACAACTACGATGTGATGCTCGACGTTTGTTATCCGGCCATAGCTGAACAACAAATCATATTGAGAAAAATGACTACTAAAATAAGTTTAAGCGTAGATGTTTGTATGGAATATGAAAGGGATTTCTACCTTAACCTCCCAGAAGTTCAAAAGGCTCTCCATGCCAATCGTACCAATCTTCCATATGCATGGTCTATGTGTAGTAATAATACTTTAAATTATAGTGAACCTGATGTCAAGATTAATATTCTTCCAATTCTTAAACGAATAGTTCAAAATCATATTCCGGTATTGGTTTACAGTGGAGACCAAGATTCGGTTGTACCATTACTAGGTTCTCGAACACTCATTCGCGAACTAGCCCATGACCTTAAATTCAAGATTACTGACCCATATAGAGTTTGGTTCCACAAAGGCCAGGTTGGAGGTTGGGTAACTGAATATGGAAACTTGTTGACGTTTGCCACTGTAAGAGGAGCAGGTCATATGGTACCATATGGACAACCATCTAGAGCATTGCATTTATTTAGTTCCTTTGTGCTTAACAAGAGACTTCCAAACACTACCCGACCTTCAATTGGAAATTGA 1434 0.394 MGVIRMKKCWFVEVLIVLSFLGTQIGVEGYPIEDLVVRLPGQPKVEFKQYAGYVDVDVKHGRNLFYYFVEADHDPHKKPLTLWLNGGPGCSSIGGGAFTELGPFYPTGDARSLRRNSESWNRASNLLFVESPAGVGWSYSNTTSDYNTGDASTANDMLLFFLKWYEKFPSYRSRKLFLTGESYAGHYIPQLANAILDYNAHSTNFKFNLKGLAIGNPLLNLDRDAQATYEYFWSHGMISDEIDLTIKNVCDFDDYTDFGSHNVSKSCDKALNETDKIVSDYINNYDVMLDVCYPAIAEQQIILRKMTTKISLSVDVCMEYERDFYLNLPEVQKALHANRTNLPYAWSMCSNNTLNYSEPDVKINILPILKRIVQNHIPVLVYSGDQDSVVPLLGSRTLIRELAHDLKFKITDPYRVWFHKGQVGGWVTEYGNLLTFATVRGAGHMVPYGQPSRALHLFSSFVLNKRLPNTTRPSIGN 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03988 477 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 36 451 IPR001563 GO:0004185|GO:0006508
Trre6g03988 477 PRINTS Carboxypeptidase C serine protease (S10) family signature 116 128 IPR001563 GO:0004185|GO:0006508
Trre6g03988 477 PRINTS Carboxypeptidase C serine protease (S10) family signature 434 447 IPR001563 GO:0004185|GO:0006508
Trre6g03988 477 PRINTS Carboxypeptidase C serine protease (S10) family signature 129 139 IPR001563 GO:0004185|GO:0006508
Trre6g03988 477 PRINTS Carboxypeptidase C serine protease (S10) family signature 164 189 IPR001563 GO:0004185|GO:0006508
Trre6g03988 477 Gene3D - 365 463 - -
Trre6g03988 477 FunFam Carboxypeptidase 365 464 - -
Trre6g03988 477 Pfam Serine carboxypeptidase 41 463 IPR001563 GO:0004185|GO:0006508
Trre6g03988 477 SUPERFAMILY alpha/beta-Hydrolases 28 471 IPR029058 -
Trre6g03988 477 Gene3D - 317 353 - -
Trre6g03988 477 Gene3D alpha/beta hydrolase 32 293 IPR029058 -
Trre6g03988 477 ProSitePatterns Serine carboxypeptidases, serine active site. 178 185 IPR018202 GO:0004185
Trre6g03988 477 FunFam Carboxypeptidase 30 294 - -
Trre6g03988 477 ProSitePatterns Serine carboxypeptidases, histidine active site. 434 451 IPR033124 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03988 Trre-Chr6 42057093 42063904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03988 324 467 Calmodulin-binding Proteins AT2G22960 29.167 2.31e-13 66.6