Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03985 ATGTCCAACACTGCTGGTCAGGTCATCAAATGCAGAGCTGCTGTAGCATGGGAGGCAGGGAAGCCACTGGTGATTGAAGAAGTAGAGGTGGCGCCACCACAGGCCGGTGAAGTACGTCTTAAGATACTCTTCACCTCCCTTTGCCACACTGATGTTTACTTCTGGGAAGCTAAGGGTCAGACTCCATTGTTTCCTCGTATATTTGGTCATGAAGCTGGAGGGATTGTGGAGAGCGTAGGCGTGGGTGTTACTCATCTGAAACCAGGGGACCATGCCCTGCCTGTATTCACAGGGGAGTGTGGCGAATGCCCACACTGTAAGTCAGAAGAGAGAAATATGTGTAATCTGCTTAGGATCAACACAGATAGAGGTATCAACCCTGATGCACCACTTGACAAAGTTTGTATTCTGAGCTGTGGAATATGTACAGGTCTTGGTGCTACAGTCAATGTTGCGAAACCGAAACCTGGTTCTTCTGTTGCTATCTTTGGACTTGGAGCTGTTGGCCTCGCTGCTGCTGAAGGGGCAAGAATTTCGGGTGCATCAAGAATCATTGGAGTTGATTTAGTTTCCAATCGATTTGAATTAGCTAAGAAGTTTGGGGTAAATGAGTTCGTCAACCCGAAAGATCACGACAAACCTGTTCAACAAGTAATTGTTGAAATGACCAACGGAGGTGTGGATCGTGCTGTTGAATGTACCGGGAGCATCCAGGCCATGATCTCAGCATTCGAATGTGTCCACGATGGATGGGGTGTTGCTGTACTTGTTGGAGTTCCAAACAAAGACGATGCCTTCAAAACTCATCCTATGAATTTCTTGAACGAAAGGACTCTTAAGGGTACCTTCTATGGTAACTACAAGCCTCGAACCGACCTTCCTAATGTTGTAGAGAAGTACATGAAAGGGGAGCTGGAACTTGAGAAATTCATCACTCACACACTACCATTCTCAGAGATTAACAAAGCTTTTGATTTGATGCTTAAAGGGGAGTCCATCAGATGTATCATTCGAATGGAGGAGTAA 1026 0.46 MSNTAGQVIKCRAAVAWEAGKPLVIEEVEVAPPQAGEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGVGVTHLKPGDHALPVFTGECGECPHCKSEERNMCNLLRINTDRGINPDAPLDKVCILSCGICTGLGATVNVAKPKPGSSVAIFGLGAVGLAAAEGARISGASRIIGVDLVSNRFELAKKFGVNEFVNPKDHDKPVQQVIVEMTNGGVDRAVECTGSIQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNFLNERTLKGTFYGNYKPRTDLPNVVEKYMKGELELEKFITHTLPFSEINKAFDLMLKGESIRCIIRMEE 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03985 341 FunFam Alcohol dehydrogenase class-P 144 282 - -
Trre6g03985 341 SUPERFAMILY GroES-like 4 148 IPR011032 -
Trre6g03985 341 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Trre6g03985 341 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 130 304 IPR036291 -
Trre6g03985 341 Gene3D - 14 122 - -
Trre6g03985 341 SUPERFAMILY GroES-like 289 338 IPR011032 -
Trre6g03985 341 Gene3D - 144 282 - -
Trre6g03985 341 PANTHER ALCOHOL DEHYDROGENASE 125 337 - -
Trre6g03985 341 Gene3D - 125 334 - -
Trre6g03985 341 Pfam Alcohol dehydrogenase GroES-like domain 36 116 IPR013154 -
Trre6g03985 341 CDD alcohol_DH_plants 9 338 - -
Trre6g03985 341 Pfam Zinc-binding dehydrogenase 167 297 IPR013149 -
Trre6g03985 341 FunFam alcohol dehydrogenase 1-like isoform X1 19 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03985 Trre-Chr6 42017629 42020228 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03985 37 331 Monolignol Biosynthesis Gene Families AT1G72680 23.602 5.33e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03985 K18857 - gmx:100783858 634.409