Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03977 ATGTTCTTCATAGGTTATAATGAATTCTGCTTTGTGCTTTCTTCATCTGTTTTGTATTTGCAGCTGACTATGTGGGACTTGAGAATGAAAGGAAACGGTGGTTGTGTTCATCGGATTAGTGGTACCCCTGGTGATTCCTTATATTCTGTTTGCAGTTCTTCCACTGCTGGAAAATATCATGCTTACCTGAAATCGTGGATACCGTCTTCCTTGGACAGCTTTGGGCTTGCTTTGCAGTTTGGAATATCTGTCATGGTTATTGCCTGCCCTTGTGCTTTGGGTTTAGCCACGCCTACTGCTGTTATGGTTGGCACCGGTGTTGGTGCATCTCAGGGTGTATTGATCAAAGGGGGGCAAGCTTTGGAAAGTGCACATAAGGTAAATTGCATTGTTTTTGACAAGACGGGTACTCTCACTATTGGGAAACCGGTAATAGTAAATACCAAACTATTGACAAAAATGGTGCTCCGGGAATTCTATGAACTTGTGGCTGCAGCAGACGTAAGCACATGCCCCCCATTTCCTTGTAAAAGCCTTAGCCTCAGTAATAGTTATAGAGAACAATTGTTTTCCTATTAA 579 0.4266 MFFIGYNEFCFVLSSSVLYLQLTMWDLRMKGNGGCVHRISGTPGDSLYSVCSSSTAGKYHAYLKSWIPSSLDSFGLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTIGKPVIVNTKLLTKMVLREFYELVAAADVSTCPPFPCKSLSLSNSYREQLFSY 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03977 192 ProSitePatterns E1-E2 ATPases phosphorylation site. 133 139 IPR018303 -
Trre6g03977 192 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 55 170 - -
Trre6g03977 192 Pfam E1-E2 ATPase 76 109 - -
Trre6g03977 192 Gene3D - 8 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03977 Trre-Chr6 41956115 41957594 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03977 56 188 Primary Pumps ATPases AT1G63440 75.940 1.61e-63 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03977 K17686 - gmx:100816893 211.846