Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03958 ATGGTACCTCCGGGTCCAGGGCCACCAACTCCCATTGGCGGTGCTCATTCTCTCTCACCTTCTCTAATGAGAACAAATTCTGGAATGTTAGGAGCTCAAGGGGCTCTCATGTCTTCGCAGACATCTTACTCTTCGCTCGTGTCTCCTCGTACTCAGTTCAACAACATGAACATTCTAGGAAATATGTCCAATATAACTTCTATGCTGAATCAATCATTCTCAAATGGAGTTCCAAGTCATGGGCTCACTGGTCAAGGAAGTAACCAGCGTGGAGGAATTGAAACTGGAGCTGAAACAGGCCAAATTTCCGGTGTTGGAAATGGGACGAGCTTTAATAATTCTCCAGCCTCATATATACAATCAAATATGGCGAATGCGGGTTCTTCTGGTCAAATTCAGGGTCAGCAATTTTCGAACCCTTCTAGCAACCAACTATTGTCAGATCATCAGCATTCTCAACAGCTTGATCCTCAAAATTTCCAACACAGCCAGCAGTCAATGCAACAGTTCCCTTCTCCTCTGAATACACAGCAGCAGCAACATTTTCAATCAATGCGAGGAGGAATAGGTGGATTGGGATCAGTGAAGTTAGAGCCCCAGGCAAACAACGACCAACTTGGACAGCAGCAGCTGCAATCAATGAGGAATCTTCCTCCAGTGAAATTGGATCAACAACAAATTCAAACAATGAGAAATCTTGCACCAGTTAAAATGGAGCCCCAGCATTGTGATCAATCGTTATTTTTGCAGCAACAACAGCAGCAACAGTTCCTCCACATGTCGAGACAGTCTTCTCAGGCTGCTGCTGCTCAGATCAATCTTTTGAACCATCACAGGCTTTTACAGTTACAACAACACCAGCAGCAACAACTCTTAAAGGCAATGCCTCAACAACGACCTCAATTACCACAACAATTTCAACAGCAGAATATGCCTATGAGGTCTCCTGTGAAACCTGCATATGAACCAGGGATGTGTGCAAGGCGGCTGACATACTACATGTATCAGCAACAACATAGACCCGAGGATAACAACATCGAGTTTTGGAGGAAGTTTGTCGCTGAATATTTTGCTCCCAATGCGAAGAAGAAATGGTGTGTTTCTATGTATGGAAGTAGCAGACAAACAACTGGAGTTTTCCCTCAGGATGGATGGCACTGTGAAATATGTAATCACAAACCTGGCCGTGGGTTTGAAGCAACTGTTGAGGTTCTTCCCAGGCTTTTCAAGATAAAGTATGAAAGTGGTACTCTGGAAGAGCTACTTTATGTTGACATGCCCCGTGAATATCATAATTCCTCGGGCCAAATTGTTCTAGATTACGCAAAAGCGATACAAGAAAGTGTTTTTGAGCAACTTCGTGTTGTTCGTGATGGTCAACTTCGAATAGTTTTCTCTCCAGACCTGAAGATATGCTCTTGGGAATTTTGTGCCCGTCGGCATGAAGAGCTCATCCCCAGAAGATTGTTAATACCTCAGGTTAGTCAGATTGGAACGGTTGCTCAGAAATACCAGTCTTTAACTCAAAATACAACACCGAATATATCTGCTCCAGAGTTACAAAACAATTGCAATATGTTTGTTACATCAGCCCGTCAATTGGCTAAAGCCCTAGAAGTTCCATTAGTTAATGATTTAGGATATACTAAGAGATACGTGCGCTGCCTACAGATATCAGAGGTGGTAAATAGCCTGAAAGACTTGATAGATCACAGCAGAGAAACAGGGACTGGACCTATGGAGAGCTTGGCCAAATTCCCTCGGAGAACTGTAAATTCATGTGGAGTTCGAAATCAAGCTCAACAGCATGAAGATCAATCAAAACAACAGCAGCAACAGCAAATGGGGGTCCACAACTCAAATGGCGATCAAAACCCAGTGCAAGCTGCTGCCATGCAAATTGGTTCCAGCAACGGTATGGTTAGTGTAAATAGTTCTGTCACCTCAGCGTCTGCATCAACAACCACAAGCACTATTGTTGGACTTCTCCATCAAAACTCTGTGAATTCTAGACAAAATTCAATGAACAATGCAAACAGTCCATATGGAGGTAGTTCTGTTCAGATTCCATCCCCTGGTTCCTCCAGTACTGTACCACAGGCTCAGCCAAGCTCATCCCCTTTTCAGTCACCGCCTACACCATCCTCTTCTAATAATCCCCCACCAACACCTCATTCTACTTTAACGCCTCCCAATCAAATAAATACAACAAATTCAACAGCTAATATTTCCTTGCAACAACAACATCAATATCAACCATCTCTTTCTGGCGATGCTGACCCAAGTGATGCTCAAAACTCGGTCAAAAAAATCATACATGAGATGATGATGTCCTCCCAGATGAACGGTACAGGTGGAATGACAGGTGTTGGTTCTCTAGGAAATGATTTGAAGAATGTAAATGGCATTCTGCCAATGAGTGCAAATACAGGGCTCAACAATAGTAACAGCACACTTAACAATAATACAGGTGTTGGTAGTTATGGAACAATGGGGTTCGGTCAATCCACTATGCCTAATGGAATTAGAGCTGCTATGGTAAACCATTCAGTCATGAATGGAAGGGGAGGAATGTCAATGTCATCTATTGCTCGGGATCAAGCTATGAATCATCAACAGGATCTTTCAAACCAACTACTTAGCAATGGTATGCATTTTGTGGTTCTTGACAGCTGCTTGTGCTGTATGATGAGCAATGGTAGAATTGCTTTCGTCGGCAGAACACAATTGGGTAGTGATAGGGTGTAG 2748 0.4323 MVPPGPGPPTPIGGAHSLSPSLMRTNSGMLGAQGALMSSQTSYSSLVSPRTQFNNMNILGNMSNITSMLNQSFSNGVPSHGLTGQGSNQRGGIETGAETGQISGVGNGTSFNNSPASYIQSNMANAGSSGQIQGQQFSNPSSNQLLSDHQHSQQLDPQNFQHSQQSMQQFPSPLNTQQQQHFQSMRGGIGGLGSVKLEPQANNDQLGQQQLQSMRNLPPVKLDQQQIQTMRNLAPVKMEPQHCDQSLFLQQQQQQQFLHMSRQSSQAAAAQINLLNHHRLLQLQQHQQQQLLKAMPQQRPQLPQQFQQQNMPMRSPVKPAYEPGMCARRLTYYMYQQQHRPEDNNIEFWRKFVAEYFAPNAKKKWCVSMYGSSRQTTGVFPQDGWHCEICNHKPGRGFEATVEVLPRLFKIKYESGTLEELLYVDMPREYHNSSGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQVSQIGTVAQKYQSLTQNTTPNISAPELQNNCNMFVTSARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSLKDLIDHSRETGTGPMESLAKFPRRTVNSCGVRNQAQQHEDQSKQQQQQQMGVHNSNGDQNPVQAAAMQIGSSNGMVSVNSSVTSASASTTTSTIVGLLHQNSVNSRQNSMNNANSPYGGSSVQIPSPGSSSTVPQAQPSSSPFQSPPTPSSSNNPPPTPHSTLTPPNQINTTNSTANISLQQQHQYQPSLSGDADPSDAQNSVKKIIHEMMMSSQMNGTGGMTGVGSLGNDLKNVNGILPMSANTGLNNSNSTLNNNTGVGSYGTMGFGQSTMPNGIRAAMVNHSVMNGRGGMSMSSIARDQAMNHQQDLSNQLLSNGMHFVVLDSCLCCMMSNGRIAFVGRTQLGSDRV 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03958 915 PANTHER LIM DOMAIN-BINDING PROTEIN 40 882 IPR029005 -
Trre6g03958 915 MobiDBLite consensus disorder prediction 291 315 - -
Trre6g03958 915 MobiDBLite consensus disorder prediction 746 763 - -
Trre6g03958 915 MobiDBLite consensus disorder prediction 670 704 - -
Trre6g03958 915 MobiDBLite consensus disorder prediction 746 765 - -
Trre6g03958 915 MobiDBLite consensus disorder prediction 670 738 - -
Trre6g03958 915 MobiDBLite consensus disorder prediction 705 728 - -
Trre6g03958 915 MobiDBLite consensus disorder prediction 1 26 - -
Trre6g03958 915 Pfam LIM-domain binding protein 329 583 IPR029005 -
Trre6g03958 915 MobiDBLite consensus disorder prediction 291 314 - -
Trre6g03958 915 MobiDBLite consensus disorder prediction 83 198 - -
Trre6g03958 915 MobiDBLite consensus disorder prediction 595 625 - -
Trre6g03958 915 MobiDBLite consensus disorder prediction 83 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03958 Trre-Chr6 41753320 41758904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03958 8 880 C2H2 Transcription Factor Family AT1G43850 56.583 0.0 695
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03958 - - gmx:100787573 1220.68