Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03956 ATGTATATGACAGATACTTACTCCGGACAGAGTTACAAGTATTTTCACGACTCACAAACCGAAGAACTGATAGAACCATCTAGTTCTGACATCTCTACAAGTTCAATTCATCCAGATAGCGCTTCTTCTTACCAGCTAATAGATTTGATTATGGAAAATCGAAGCGTGGATTCAATTGAAGTTGATGGTGTAATGAGATCAAAACTAGAAGCATTGGAGAGAGCATTACTTGATGATAGTGACATTGAGGTGGAAGAAGAATATGTGATTTCTCAAAGCATGGAAATTGATCCTAACATTATCGATTGGGCTGATCCGGATCCAATTCAGAATATGCTACTACGTGACTCACCAAAGGAATATTCATCTTCAGATTCCAATATTAGCAGCATCAGCAGAGAAATACCAAAAATTTCTAGGACCCCTAAGCAATTATTATATGAATGTGCTACAGCAATTTCAGAAGGAAATGAAGAGGGAGCATCGTTGATGATAAACGTTCTTCGGCAGATGGTCTCAATTCAAGGAGAGCCTTCTCAAAGAATTGCAGCCTATATGGTGGAGGGACTTGCCGCTCGCCTCGCTGAATCGGGAAAAAGTATTTATAGAGCTTTAAAATTTAAAGATGAAATGAAGATTCATATAATAGATTTTGACATCAATCAAGGAAGTCAGTATATAAATCTTATTCAAACACTTGCTTCGAGGTCTATTAGGCCATCCCATGTTAGATTGACTGGCATTGATGATCCTGAGTCCGTGCAGCGATCCCTTGGAGGACTAAAGATCATAGGACAAAGACTTGAACAACTAGCAGAAACACTTGGTTTGTCATTTGAATTCCGAGCAGTCGCATCAAGGACTTCAATTGTCACTTCATCGATGCTTAATTGTCGTCAAGGAGAAGCTCTTGTGGTGAATTTTGCTTTCCAGCTTCATCATATGCCTGATGAGAGTGTTTCAACAGTAAACGAACGAGACCAACTTCTTCGTTTGGTAAAGGGTTTGAATCCGAAGCTTGTAACGGTCGTGGAGCAAGATGTAAACACCAATACTACTCCTTTCTTTCAAAGATTTGTTGAAGCTTACAATTACTATTCGGCTGTGTTTGAGTCGCTTGATGTTACTCTTCCTAGAGAGAGTCAGGATAGGATGAATGTCGAGAGGCAATGCTTAGCGAGGGACATTGTTAATACAGTTGCATGTGAAGGCGAGGATCGGATAGAACGGTATGAAGTCGCAGGAAAATGGAGAGCTAGGATGGCAATGGCTGGCTTCATTTCATCTCCAATGAGCACTAACGTGAGCGATGAAATACGAAAACTCGTTAAGGCGTATTGTGATAGGTACAAGATAAAGGAGGAAAAGGGTGCACTTCATTTTGGTTGGGAAGACAAAAACTTGATTGTTGCTTCAGCTTGGAGGTGA 1428 0.4034 MYMTDTYSGQSYKYFHDSQTEELIEPSSSDISTSSIHPDSASSYQLIDLIMENRSVDSIEVDGVMRSKLEALERALLDDSDIEVEEEYVISQSMEIDPNIIDWADPDPIQNMLLRDSPKEYSSSDSNISSISREIPKISRTPKQLLYECATAISEGNEEGASLMINVLRQMVSIQGEPSQRIAAYMVEGLAARLAESGKSIYRALKFKDEMKIHIIDFDINQGSQYINLIQTLASRSIRPSHVRLTGIDDPESVQRSLGGLKIIGQRLEQLAETLGLSFEFRAVASRTSIVTSSMLNCRQGEALVVNFAFQLHHMPDESVSTVNERDQLLRLVKGLNPKLVTVVEQDVNTNTTPFFQRFVEAYNYYSAVFESLDVTLPRESQDRMNVERQCLARDIVNTVACEGEDRIERYEVAGKWRARMAMAGFISSPMSTNVSDEIRKLVKAYCDRYKIKEEKGALHFGWEDKNLIVASAWR 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03956 475 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 142 470 IPR005202 -
Trre6g03956 475 ProSiteProfiles GRAS family profile. 133 475 IPR005202 -
Trre6g03956 475 Pfam GRAS domain family 207 475 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03956 Trre-Chr6 41739887 41741521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03956 5 475 GRAS Transcription Factor Family AT1G21450 55.268 0.0 537
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre6g03956 GRAS 3e-98 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03956 - - gmx:100788103 699.123