Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03954 ATGGAGGATTCTTCTTCAGCAGCTGAAGACACCAAGAGTTGTCCCCGTGGTCACTGGCGACCCGCTGAAGACGAAAAGCTTCGACAACTTGTTGAACAATATGGTGCCCAAAATTGGAATTCAATTGCTGAAAAACTCCAAGGAAGATCAGGGAAAAGTTGTAGGTTGAGATGGTTCAATCAGTTAGACCCAAGAATTAACAGAAGACCTTTCACAGAAGAGGAAGAAGAGAGACTACTCGCGGCTCATCGTATTCATGGAAACAAATGGGCACTAATCGCGCGACTATTCCCCGGTAGAACTGATAATGCAGTGAAGAATCATTGGCATGTTGTTATGGCTAGAAAACAAAGAGAACAATCTAAGTTATGTGGTAAAAGAAGTTTTCAAGACCTTTATAACAACACTTCTTCTTCAAGTATACTTAATTTCCCTTACATGTCGCGAATCGGATATGAAAATGGAAAATTCTATCAATTTCAGAACAACCTTGATACTTCTTCTAGTTCTCTTGCTTCTTGGAATTTTGCTTCGGCGCTAACAAAAAATACTACTACTGCTACTACCGCTACTCTTTTTCCGGATAATTCTCTCAAGGAAAAAGTATCCAATTGTTCGAAAGGTTCAGATAGATCATTTCTCTACAAAATTTGTCAAAATCCAACATTCTCATCATCATCATCACTTCCAAATTACAAGAGGGTTGTTCCAAATGCTTTTGGTTTTTTTAGTTCTTCCGATGATGGAAGGATAAGAAACGATTTGATGAGTAGTTTACGCGATAATTCATCAACATTAATCGCAAACTTAAAAGCTTCCAAGGAGAAAGAGCAAGATCATGAGGTCGAAATTGAGCAGCACAAAGAAGTTCCTTTCATTGATTTTCTTGGTGTTGGAGTCTCTTCATCATAA 912 0.3838 MEDSSSAAEDTKSCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVVMARKQREQSKLCGKRSFQDLYNNTSSSSILNFPYMSRIGYENGKFYQFQNNLDTSSSSLASWNFASALTKNTTTATTATLFPDNSLKEKVSNCSKGSDRSFLYKICQNPTFSSSSSLPNYKRVVPNAFGFFSSSDDGRIRNDLMSSLRDNSSTLIANLKASKEKEQDHEVEIEQHKEVPFIDFLGVGVSSS 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03954 303 Coils Coil 270 290 - -
Trre6g03954 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 62 IPR017930 -
Trre6g03954 303 PANTHER MYB PROTEIN-RELATED 16 189 - -
Trre6g03954 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Trre6g03954 303 ProSiteProfiles Myb-like domain profile. 16 62 IPR001005 -
Trre6g03954 303 Gene3D - 70 130 - -
Trre6g03954 303 FunFam MYB transcription factor 69 140 - -
Trre6g03954 303 Pfam Myb-like DNA-binding domain 19 79 - -
Trre6g03954 303 Gene3D - 16 67 - -
Trre6g03954 303 MobiDBLite consensus disorder prediction 1 21 - -
Trre6g03954 303 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Trre6g03954 303 FunFam MYB transcription factor 16 67 - -
Trre6g03954 303 SUPERFAMILY Homeodomain-like 14 109 IPR009057 -
Trre6g03954 303 CDD SANT 19 60 IPR001005 -
Trre6g03954 303 CDD SANT 70 113 IPR001005 -
Trre6g03954 303 SMART sant 15 64 IPR001005 -
Trre6g03954 303 SMART sant 67 115 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03954 Trre-Chr6 41714536 41715717 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03954 14 201 MYB Transcription Factor Family AT1G17950 50.685 4.91e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre6g03954 Myb_DNA-bind_6 2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03954 K09422 - gmx:100817328 367.466