Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03952 ATGTCTCAGGGAAGAGGCAGTGCATCTATGAACATGGCCACTGTGATGATTTCACTGCTCTGCCTTTTGGTTATTGCTCAAAGTGCTAATGCAGCAACCTACACCGTTGGAGGACCTGGAGGATGGACCTTCAACACTGATACTTGGCCAAATGGAAAAAAGTTTAGAGCTGGTGATGTGCTAATCTTCAACTATGATTCAACGACGCACAATGTGGTTGCCGTCGACAAAAGCGGACACAACAGCTGCAAGGCGACGGGAGGTGCTAAAGTGTTCAGTTCAGGGAAAGACCAAATCAGGCTAGCAAGAGGACAGAACTTTTTCATATGCAGCGTTCCTGGTCACTGCCAATCTGGGATGAAGGTTTCCATCAATGCAGTCTAG 384 0.474 MSQGRGSASMNMATVMISLLCLLVIAQSANAATYTVGGPGGWTFNTDTWPNGKKFRAGDVLIFNYDSTTHNVVAVDKSGHNSCKATGGAKVFSSGKDQIRLARGQNFFICSVPGHCQSGMKVSINAV 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03952 127 ProSiteProfiles Phytocyanin domain profile. 32 127 IPR003245 GO:0009055
Trre6g03952 127 Pfam Plastocyanin-like domain 42 120 IPR003245 GO:0009055
Trre6g03952 127 Gene3D - 32 127 IPR008972 -
Trre6g03952 127 CDD Plantacyanin 32 126 IPR041844 -
Trre6g03952 127 SUPERFAMILY Cupredoxins 32 126 IPR008972 -
Trre6g03952 127 PANTHER BLUE COPPER PROTEIN 27 125 IPR039391 GO:0009055
Trre6g03952 127 FunFam basic blue protein-like 32 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03952 Trre-Chr6 41670441 41671728 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03952 1 127 Phytocyanin Superfamily AT1G17800 38.686 9.64e-28 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03952 - - gmx:100788635 219.164