Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03932 ATGAATAGATCAGACTTACAACAATTTGCAGCATCATCTTCATCTCATTTTCGTAACCGTTTTCCAAAATCATTCTCTCTTCGTAAGAAAGTACCATGGTGGTACCAAATACTTCATCCACGTTCAAAGTTCATTGCACAATGGAACCTTACATTCCTCTATGCATGCCTATTTGCTCTTTTTTTAGATCCTCTTTATTTCTATATTCCGATTACCGGAGACAAAGCGTGTATGCAAACGGATTTGGTTCTCGGTGTGGTTGTCACGTTCTTGCGCACCGTGGCTGATCTCTTCTTTTTGTTTCATGTGATTCTTAAGTTCCGTACCGCGTTCAATTCTCCTACCTCTCATGTTTATGGTCGGAAAGAACTTATTAGTGATCCGAGTGAGATCGCCCGTAGATATCTCAAGCATGATTTTGTCATTGATCTTCTTGCCACCCTTCCTTTACCTCAGATCGTTATTTGGTTTATAGTTCCAGCGACAAAAAATTCAACGGCAGCTCATGTAAACCACACACTGTCCCTAATCGTTCTCATTCAGTACATTCCTAGATTGTTTCAGCTTTTTCCTTTACAACGCCGAATCGTGAAGACTAGCGGGCTTATAGCAAAAACTGCTTTGGCAGGAGCGCTATACAATCTCGGTTTCTACATGCTCGCGAGCCATGTTTTAGGGGCAACATGGTATGTGTCTTCTATTCAAAGACAATATGAGTGTTGGAGAATAATGTGCAGGAAGGAAATGAATAGAACACATTCTCCTTCTTGTAATCCTTCTTTTCTTGATTGTACTTCTCTTTCTAACCGTGAAAGACAAGTTTGGTTTCGACGCACTCGAGTCCTAACTAATTGTGATGCACTCAATGTTAAAAACCACTTTCAATTTGGAATGTTTGCTGATGCTTTCACTGATCATGTTTCTTCCTCAAAATTCATACAAAAATATTTCTATTGCCTCTGGTGGGGTTTGAAAAATCTAAGTTCCTATGGACAAAATCTTCATACTAGTACTTATAGTGGTGAAACATTATTTTCAAGTTTCATATGCATAGCAGGACTTATTCTGTTTGCACATCTCATTGGTAACATGCAGAATTATCTGCAATCTTCAACTGCAAGACTTGAAGAATGGAGACTTAAACAAAAAGATACAGAAGAATGGATGAATCATCGTCAACTTCCACCAGAACTGCAAGAGCGCGTTCGTCGCTTTGTTCAGTACAAATGGCTTGCCACTAGAGGTGTTGACGAAGAAGCCATTTTGAAATCCTTGCCTGTTGATCTTCGCCGCCAGATTCAAAGACATCTCTGTCTTGATATTGTTCGCCGGGTACCTTTTTTCGGGCAAATGGATGATCAACTTCTAGATGCTATATGCGAACGTCTAGTTTCATCATTGAACACGAAAGACTCATATATAGTTAGAGAAGGTGATCCAGTGAGAGAGATGCTTTTTATCATCAGAGGAAGTGTAGAGAGTTCTACAACAGATGGTGGTAGATCAGGATTCTTCAATTCAATCACACTAAAACCGGGCGATTTTTGTGGCGAAGAATTGTTAACATGGGCTTTGATGCCAGCATCTAGTCTTAATCTTCCATCTTCTACAAGAACTGTAAAATCAATAACTGAAGTTGAAGCATTTGCACTTAGAGCAGAAGATCTAAAATTTGTGTCGAGCCAATTTAAACGTCTTCATAGTAAGAAACTGCAACATGCTTTCAGATACTATTCTCATCAGTGGAGAGCTTGGGGGGCTTCTTTTATACAAGCGGCGTGGAGGCGTCACCGGAAGCGACAATTGGCAATGGAGTTGATGGAAAAAGAGAACTTGTATTATGAAAATGTGATGGAGCTAGATGATTATGAAGAGAGTGGTGCAGGAGAAAGTTCCATGGGAATGGAGGATAGTGCTAGCCAGGGACAAAATTTTGGGGCTACATTTTTGGCTTCAAAATTTGCTGCTAACACTAGAAAAGGAGCAGTTAAAAAGGTTACAATAATACCTGATAGTAGCAGTTTAAAGATGCCTAAGATGTTTAAGCCAACAATGCCTGATTTCTCAACATTTCAAGAAGATTAA 2085 0.3957 MNRSDLQQFAASSSSHFRNRFPKSFSLRKKVPWWYQILHPRSKFIAQWNLTFLYACLFALFLDPLYFYIPITGDKACMQTDLVLGVVVTFLRTVADLFFLFHVILKFRTAFNSPTSHVYGRKELISDPSEIARRYLKHDFVIDLLATLPLPQIVIWFIVPATKNSTAAHVNHTLSLIVLIQYIPRLFQLFPLQRRIVKTSGLIAKTALAGALYNLGFYMLASHVLGATWYVSSIQRQYECWRIMCRKEMNRTHSPSCNPSFLDCTSLSNRERQVWFRRTRVLTNCDALNVKNHFQFGMFADAFTDHVSSSKFIQKYFYCLWWGLKNLSSYGQNLHTSTYSGETLFSSFICIAGLILFAHLIGNMQNYLQSSTARLEEWRLKQKDTEEWMNHRQLPPELQERVRRFVQYKWLATRGVDEEAILKSLPVDLRRQIQRHLCLDIVRRVPFFGQMDDQLLDAICERLVSSLNTKDSYIVREGDPVREMLFIIRGSVESSTTDGGRSGFFNSITLKPGDFCGEELLTWALMPASSLNLPSSTRTVKSITEVEAFALRAEDLKFVSSQFKRLHSKKLQHAFRYYSHQWRAWGASFIQAAWRRHRKRQLAMELMEKENLYYENVMELDDYEESGAGESSMGMEDSASQGQNFGATFLASKFAANTRKGAVKKVTIIPDSSSLKMPKMFKPTMPDFSTFQED 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03932 694 FunFam Cyclic nucleotide-gated ion channel 1 374 438 - -
Trre6g03932 694 Gene3D Helix hairpin bin 373 438 - -
Trre6g03932 694 Gene3D - 71 371 - -
Trre6g03932 694 SMART cnmp_10 447 578 IPR000595 -
Trre6g03932 694 Pfam Ion transport protein 48 374 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Trre6g03932 694 CDD CAP_ED 447 578 IPR000595 -
Trre6g03932 694 ProSiteProfiles cAMP/cGMP binding motif profile. 447 521 IPR000595 -
Trre6g03932 694 Gene3D Jelly Rolls 445 565 IPR014710 -
Trre6g03932 694 SUPERFAMILY Voltage-gated potassium channels 40 369 - -
Trre6g03932 694 FunFam Cyclic nucleotide-gated ion channel 1 445 563 - -
Trre6g03932 694 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 22 688 - -
Trre6g03932 694 Pfam Cyclic nucleotide-binding domain 470 557 IPR000595 -
Trre6g03932 694 SUPERFAMILY cAMP-binding domain-like 376 572 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03932 Trre-Chr6 41436839 41440036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03932 13 688 Ion Channels AT3G48010 64.756 0.0 913
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03932 K05391 - gmx:100783672 1207.97