Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03929 ATGGAGAGTTCTCATTCTCCTTCTTGTGTCATTGTTGCTTGTGATGCGACAAGGGACCGCAATGAGCACGATATCAAGCTCGTTATTGATCATGTTCGTGCAAGGGGTATCATTCTCTCTTCTGGCGACAGGTTGCTCGTGCTCTGCATCTTGCATAAGGTGTCTCACCCAATGGGATACCAGACATTAGCATCTCCTGAATATTTTGCCGGCACCAATTTTCGTGCAATGGAGGAAGAAGTCAGAAAAAAAGTGCATGTTTATGGAAATGAGCTTTTATCAAGTCTTGAAGATTTTGAAATCCAAGGGGTTACTGTTGATATTCAAGTCACTGCAGGTTTTCCAATTAGACAGATTATTTTACAAGAGGTTAAAAACTATAATGCATCTTGGATTGTACTTGATAGATACCTTCGGCGCGACATGAGGTACCACCTTAACAAGATACCATGTAAGGTAGCATTGATTAAAGATGACTTGTCTGTGGATATATGGAGATCTAAAAATGAAAATGACATAAATGTCACAGAAACAAAACCTGTCTTTTCTTTGTCCAAGTTTGTATCATTATCAGATTGCCATAGCATGCAAGACATTGAACATTCAATTATATCTTGCAAAAGTTATCCCCATTCCATAGCTTCTTCTGATAGCTTTGGCACTATTAAGAGCTATTCAATGCATTCATATGCCAACAGTTCATTACATTCTGGATCTTCTTCTAAGCATGAAAGATCAGGTACAATAAGCACCAAAGGAGAATATAGAAATCTTACTACATCTCAGATTGGTCAAAAGCAAAACCCATGTGTCTTTCTACCAAAATCTTCAGATGCACCAATTCTATGTGCTGGTTGTGGAATAAGGACAGAGTTATCAATCAAGGAGTCAAATAGGTTTACCTATTCTGAAATAAAGCTTGCAACAAATGAATTTTCAAAGGATAACTTAATAGGTGAAGGTGGATATGGTCATGTATATAAGGGTGTGCTTAAAGATGGACAACAAATTGCTGCAAAAGTAAGGAAACAAGAAAGTGCACAAGGGTTTTCTGAATTTCATTCAGAAGTTTATGTCTTGAGTTTTGCTAGACACAAGAATATAGTGATGCTGTTAGAAAATAGTGAAACAGTTCTTGATTGGCCTCAAAGATATGGTATTGCACTTGGGACTGCAAAGGGATTGCGTTTCCTACATGAGGAATGTAGAGGTGGTCCTGTTATTCATAGGGACATGCGACCAAGCAATATACTTCTCACTCATGATTTTGTTCCCATGTTGGGTGACTTTGGCCTAGCCAAATGGAATACTGGTGATGATCCTCTTCAAACAAGGATAATGGGCACATTTGGATACCTTGCTCCTGAGTATGCTGAAGATGGTATTGTTTCTGAAGGAACAGATGTGTATTCTTATGGTGTCACGCTGTTACAATTGATATCAGGACGCCAAGTGGCCAATTTCAATAATCCAGATCAGCAACAACAATCTCTTCGACAATGGGCTGAACCAATCATTGAAAAGTTGGCTTTACAAGAACTGATTGATCCTCGTTTGGGAGAATCATATGACACATATGAGTTATACCTTATGGCTAAAGCAGCTTATTTTTGTATGCAAAGGAAGCCTGAGATGCGTCCATCAATGAGAGAGGTTGTGCGTTTTCTTGAGGGAGAAAGTTATCAATTCCAGACCCTGGAACTGGAAGGTCAATTTGTACCAAACCATAACATTTGA 1737 0.3874 MESSHSPSCVIVACDATRDRNEHDIKLVIDHVRARGIILSSGDRLLVLCILHKVSHPMGYQTLASPEYFAGTNFRAMEEEVRKKVHVYGNELLSSLEDFEIQGVTVDIQVTAGFPIRQIILQEVKNYNASWIVLDRYLRRDMRYHLNKIPCKVALIKDDLSVDIWRSKNENDINVTETKPVFSLSKFVSLSDCHSMQDIEHSIISCKSYPHSIASSDSFGTIKSYSMHSYANSSLHSGSSSKHERSGTISTKGEYRNLTTSQIGQKQNPCVFLPKSSDAPILCAGCGIRTELSIKESNRFTYSEIKLATNEFSKDNLIGEGGYGHVYKGVLKDGQQIAAKVRKQESAQGFSEFHSEVYVLSFARHKNIVMLLENSETVLDWPQRYGIALGTAKGLRFLHEECRGGPVIHRDMRPSNILLTHDFVPMLGDFGLAKWNTGDDPLQTRIMGTFGYLAPEYAEDGIVSEGTDVYSYGVTLLQLISGRQVANFNNPDQQQQSLRQWAEPIIEKLALQELIDPRLGESYDTYELYLMAKAAYFCMQRKPEMRPSMREVVRFLEGESYQFQTLELEGQFVPNHNI 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03929 578 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 284 380 - -
Trre6g03929 578 ProSitePatterns Protein kinases ATP-binding region signature. 318 340 IPR017441 GO:0005524
Trre6g03929 578 FunFam Lectin-domain containing receptor kinase A4.3 363 574 - -
Trre6g03929 578 ProSiteProfiles Protein kinase domain profile. 312 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g03929 578 ProSitePatterns Tyrosine protein kinases specific active-site signature. 407 419 IPR008266 GO:0004672|GO:0006468
Trre6g03929 578 Gene3D Phosphorylase Kinase; domain 1 287 371 - -
Trre6g03929 578 Gene3D Transferase(Phosphotransferase) domain 1 372 559 - -
Trre6g03929 578 PANTHER OS01G0750732 PROTEIN 233 560 - -
Trre6g03929 578 SUPERFAMILY Protein kinase-like (PK-like) 296 560 IPR011009 -
Trre6g03929 578 Pfam Protein kinase domain 387 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g03929 578 Gene3D HUPs 2 157 IPR014729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03929 Trre-Chr6 41422329 41425947 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03929 231 559 Trihelix Transcription Factor Family AT4G32710 38.753 7.29e-63 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Trre6g03929 Pkinase 2.4e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03929 - - vun:114163670 879.011