Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03928 ATGGAGAGTTCTCATTCTCCTTCTTGTGTCATTGTTGCTTGTGATGCGACAAGGGACCGCAATGAGCACGATATCAAGCTCGTTATTGATCATGTTCGTGCAAGGGGTATCATTCTCTCTTCTGGCGACAGGTTGCTCGTGCTCTGCATCTTGCATAAGGTGTCTCACCCAATGGGATACCAGACATTAGCATCTCCTGAATATTTTGCCGGCACCAATTTTCGTGCAATGGAGGAAGAAGTCAGAAAAAAAGTGCATGTTTATGGAAATGAGCTTTTATCAAGTCTTGAAGATTTTGAAATCCAAGGGGTTACTGTTGATATTCAAGTCACTGCAGGTTTTCCAATTAGACAGATTATTTTACAAGAGGTTAAAAACTATAATGCATCTTGGATTGTACTTGATAGATACCTTCGGCGCGACATGAGGTACCACCTTAACAAGATACCATGTAAGGTAGCATTGATTAAAGATGACTTGTCTGTGGATATATGGAGATCTAAAAATGAAAATGACATAAATGTCACAGAAACAAAACCTGTCTTTTCTTTGTCCAAGTTTGTATCATTATCAGATTGCCATAGCATGCAAGACATTGAACATTCAATTATATCTTGCAAAAGTTATCCCCATTCCATAGCTTCTTCTGATAGCTTTGGCACTATTAAGAGCTATTCAATGCATTCATATGCCAACAGTTCATTACATTCTGGATCTTCTTCTAAGCATGAAAGATCAGGTACAATAAGCACCAAAGGAGAATATAGAAATCTTACTACATCTCAGATTGGTCAAAAGCAAAACCCATGTGTCTTTCTACCAAAATCTTCAGATGCACCAATTCTATGTGCTGGTTGTGGAATAAGGACAGAGTTATCAATCAAGGAGTCAAATAGGTTTACCTATTCTGAAATAAAGCTTGCAACAAATGAATTTTCAAAGGATAACTTAATAGGTGAAGGTGGATATGGTCATGTATATAAGGGTGTGCTTAAAGATGGACAACAAATTGCTGCAAAAGTAAGGAAACAAGAAAGTGCACAAGGGTTTTCTGAATTTCATTCAGAAGTTTATGTCTTGAGTTTTGCTAGACACAAGAATATAGTGATGCTGTTAGGTTACTGTTGCAAAGAAAATAAAAATATTCTTATATATGAATATATTTGTAATAAGTCTCTTCATTGGCATTTATTTGAAAATAGTGAAACAGTTCTTGATTGGCCTCAAAGATATGGTATTGCACTTGGGACTGCAAAGGGATTGCGTTTCCTACATGAGGAATGTAGAGGTGGTCCTGTTATTCATAGGGACATGCGACCAAGCAATATACTTCTCACTCATGATTTTGTTCCCATGTTGGGTGACTTTGGCCTAGCCAAATGGAATACTGGTGATGATCCTCTTCAAACAAGGATAATGGGCACATTTGGATACCTTGCTCCTGAGTATGCTGAAGATGGTATTGTTTCTGAAGGAACAGATGTGTATTCTTATGGTGTCACGCTGTTACAATTGATATCAGGACGCCAAGTGGCCAATTTCAATAATCCAGATCAGCAACAACAATCTCTTCGACAATGGGCTGAACCAATCATTGAAAAGTTGGCTTTACAAGAACTGATTGATCCTCGTTTGGGAGAATCATATGACACATATGAGTTATACCTTATGGCTAAAGCAGCTTATTTTTGTATGCAAAGGAAGCCTGAGATGCGTCCATCAATGAGAGAGGTTGTGCGTTTTCTTGAGGGAGAAAGTTATCAATTCCAGACCCTGGAACTGGAAGGTCAATTTGTACCAAACCATAACATTTGA 1815 0.3802 MESSHSPSCVIVACDATRDRNEHDIKLVIDHVRARGIILSSGDRLLVLCILHKVSHPMGYQTLASPEYFAGTNFRAMEEEVRKKVHVYGNELLSSLEDFEIQGVTVDIQVTAGFPIRQIILQEVKNYNASWIVLDRYLRRDMRYHLNKIPCKVALIKDDLSVDIWRSKNENDINVTETKPVFSLSKFVSLSDCHSMQDIEHSIISCKSYPHSIASSDSFGTIKSYSMHSYANSSLHSGSSSKHERSGTISTKGEYRNLTTSQIGQKQNPCVFLPKSSDAPILCAGCGIRTELSIKESNRFTYSEIKLATNEFSKDNLIGEGGYGHVYKGVLKDGQQIAAKVRKQESAQGFSEFHSEVYVLSFARHKNIVMLLGYCCKENKNILIYEYICNKSLHWHLFENSETVLDWPQRYGIALGTAKGLRFLHEECRGGPVIHRDMRPSNILLTHDFVPMLGDFGLAKWNTGDDPLQTRIMGTFGYLAPEYAEDGIVSEGTDVYSYGVTLLQLISGRQVANFNNPDQQQQSLRQWAEPIIEKLALQELIDPRLGESYDTYELYLMAKAAYFCMQRKPEMRPSMREVVRFLEGESYQFQTLELEGQFVPNHNI 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03928 604 Pfam Protein kinase domain 313 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g03928 604 ProSitePatterns Protein kinases ATP-binding region signature. 318 340 IPR017441 GO:0005524
Trre6g03928 604 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 284 387 - -
Trre6g03928 604 CDD STKc_IRAK 318 584 - -
Trre6g03928 604 SUPERFAMILY Protein kinase-like (PK-like) 296 586 IPR011009 -
Trre6g03928 604 ProSitePatterns Tyrosine protein kinases specific active-site signature. 433 445 IPR008266 GO:0004672|GO:0006468
Trre6g03928 604 ProSiteProfiles Protein kinase domain profile. 312 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g03928 604 PANTHER OS01G0750732 PROTEIN 233 586 - -
Trre6g03928 604 Gene3D Phosphorylase Kinase; domain 1 287 387 - -
Trre6g03928 604 Gene3D Transferase(Phosphotransferase) domain 1 389 595 - -
Trre6g03928 604 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 388 591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03928 Trre-Chr6 41422329 41425947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03928 300 583 Trihelix Transcription Factor Family AT5G38560 44.674 4.90e-78 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Trre6g03928 Pkinase 6.8e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03928 - - vun:114163670 951.814