Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03920 ATGGGTAAGGAAAAGGTTCACATTAGCATTGTTGTCATCGGCCATGTCGACTCTGGGAAGTCAACTACCACCGGTCACTTGATCTACAAGCTTGGAGGTATTCACAAGTCTGTGATTGAGAGGTTTGAGAAAGAAGCTGCTGAGATGAACAAGCGTTCATTCAAGTATGCCTGGGAGTGGGTGCTTGACAAACTCAAGTGTGAACGCGAAAGAGCTGGTCTTTCCAACGATGGTCAGACGCGTGAACATGCTCTCCTTGCTTTCACTCTTGGTGTGAAGCAAATGATATGTTGCTGCAACAAGATGGATGCCACTACACCTAAGTACTCGAAGGGTAGGTATGATGAAATTGTGAAGGAAGTTTCATCCTATTTGAAGAAAGTTGGCTATAACTCAGATAAAATTCCATTTGTTCCCATCTCTGGTTTTGAGGGAGACAACATGATTGAGCACTCTACAAATCTTGACTGTGATTATCATGAATCACCCTGGCCTGGACAGATTAGAAATGGCTATGCCCCTGTTCTTGACTGTCACACCTCCCACATTGCTGTCAAGTTTGCTGAGCTTGTTACCAAGATTGACAGACGTTCTGGTATAGAGATTGAGAAGGAGCCAAAATTCTTGAAGAATGGTGATGCTGGTATTATTAAGATGATTCCCACCAGGCCCATGGTGGTTGAGACTTTCTCTGAATATCCTCCACTCGGCCGTTTTGCTGTGAGGGACATGCGACAAACTGTGGCTGTTGGAGTTATCAAGGCTGTGGAGAAGCAATCCTTAGGAGGAAGGTGTAATTGTTCATTCAAGAAGAAATGA 819 0.4432 MGKEKVHISIVVIGHVDSGKSTTTGHLIYKLGGIHKSVIERFEKEAAEMNKRSFKYAWEWVLDKLKCERERAGLSNDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKGRYDEIVKEVSSYLKKVGYNSDKIPFVPISGFEGDNMIEHSTNLDCDYHESPWPGQIRNGYAPVLDCHTSHIAVKFAELVTKIDRRSGIEIEKEPKFLKNGDAGIIKMIPTRPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKQSLGGRCNCSFKKK 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03920 272 PANTHER TRANSLATION FACTOR 4 71 - -
Trre6g03920 272 Gene3D - 1 72 IPR027417 -
Trre6g03920 272 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 164 256 IPR009001 -
Trre6g03920 272 Gene3D Translation factors 163 257 - -
Trre6g03920 272 Pfam Elongation factor Tu C-terminal domain 165 256 IPR004160 -
Trre6g03920 272 CDD EF1_alpha_III 165 253 - -
Trre6g03920 272 Gene3D - 73 162 IPR027417 -
Trre6g03920 272 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 156 IPR027417 -
Trre6g03920 272 Pfam Elongation factor Tu GTP binding domain 7 71 IPR000795 GO:0003924|GO:0005525
Trre6g03920 272 Pfam Elongation factor Tu GTP binding domain 78 149 IPR000795 GO:0003924|GO:0005525
Trre6g03920 272 FunFam Elongation factor 1-alpha 162 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03920 Trre-Chr6 41186029 41188828 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03920 1 263 Eukaryotic Initiation Factors Gene Family AT1G07930 61.219 2.85e-142 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03920 K03231 - oeu:111393027 293.508