Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03919 ATGCACCGTGAAGCTCTCATCGAGGCCCTTCCCGGTTACAATGTGGGATTTAATATTAAGCATATTGGTGTTGAGGAACTCAAGCGTGGTTATGTTGCCTCAAATGCTTATGATGATCCAGCCAGGAGGGCCACTAACTTTACATCTCAATTTGCTGAGCTTGTTACCAAGATTGACAGACGTTCTGGTATAGAGATTGAGAAGGAGCCAAAATTCTTGAAGAATGGTGATGCTGGTATTATTAAGATGATTCCCACCAGGCCCATGGTGGTTGAGACTTTCTCTGAATATCCTCCACTCGGCCGTTTTGCTGTGAGGGACATGCGACAAACTGTGGCTGTTGGAGTTATCAAGGCTGTGGAGAAGCAATCCTTAGGAGGAAGAAGCAGAAACAAAAAAGTAGTCGGTTTTCAATCTCAATTCTTCAACTTCATCTTCTCTTCTATTCTCAATCTCACTTTCTTTCTCATACATATACACATCTTCAATCCAAATCGCTTCTTAATTCTCATTCTCAATTCTTCATCTTCATCATCTTCTATTTTCACACCAAAGAAGGTTGATACTAAAGGATTTAACTAA 582 0.4072 MHREALIEALPGYNVGFNIKHIGVEELKRGYVASNAYDDPARRATNFTSQFAELVTKIDRRSGIEIEKEPKFLKNGDAGIIKMIPTRPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKQSLGGRSRNKKVVGFQSQFFNFIFSSILNLTFFLIHIHIFNPNRFLILILNSSSSSSSIFTPKKVDTKGFN 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03919 193 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 46 120 IPR009001 -
Trre6g03919 193 FunFam Elongation factor 1-alpha 38 121 - -
Trre6g03919 193 Pfam Elongation factor Tu C-terminal domain 43 120 IPR004160 -
Trre6g03919 193 Gene3D Translation factors 42 121 - -
Trre6g03919 193 PANTHER ELONGATION FACTOR 1 ALPHA 1 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03919 Trre-Chr6 41180062 41186528 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03919 1 127 Eukaryotic Initiation Factors Gene Family AT5G60390 63.226 2.40e-62 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03919 K03231 - smo:SELMODRAFT_270693 186.422