Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03911 ATGGAGACGTATGGTTGTGTTAAGGGAGCAACATGCAAAAATCTTCTTGGAAGTTACAATTGTTCATGCCCACCAGGATATGAGGGAGACGGGAAAAATAAAGGAACAGGATGCATTAAAAAATTGAGCACCGAACAAAGGAAAGAGATCATATTGATCATCGCATTGAGTGTCAGCTTAAGCCTCCTAGCACTACTGGTTGGAAGTTTTTATGCATATTTTGCATTAAAGAAAAGAAAGCTCGTTAAACTTAAAGAACAATTTTTTCAACAAAACGGTGGCTTACTGTTACAACAACAGATACGGAGGCATGGAGGATCAACTGAAACAACAAAAGTCTTCACTCTTGAGGAGCTAAAAGAAGCTACCAACAACTTCGATGAAGGAAAGATCCTAGGACAAGGAGGTCAGGGAATAGTTTACAAAGGAGTTTTACAAGATAAAAGAATTGTAGCGATAAAAAAGTCCAAAATCAATGACCCAGACCAGATTGAGCCATTCATCAATGAAGTGGTCATTCTTTCCCAAATCAACCACAGAAATGTGGTAAAGCTTTTTGGTTGTTGTCTAGAGACAGAAGTTCCCTTGCTTGTTTATGAATTCATTCCCAATGGCACTGTTCATGAGCATTTGCATGATCAAAACCAATCTATAAAGCTTACATGGAAAACAAGATTAAGAATAGCAAAAGAAACAGCTGCTGTCCTGGCATACCTACATTCTGCTGCTGCTACACCTATCATACATAGAGATGTGAAATCTACAAATATACTCCTAGATCACAATCTCACTGCAAAGGTTTCTGACTTTGGAGCTTCAAGGATTGTTCCTCTTGATCATAGTCAGATAAACACTCTAGTGCAGGGGACATTGGGGTATCTTGACCCAGAATACCTCCTCACAAGCCAGTTAACAGAGAAGAGTGATGTTTATAGTTTTGGGGTGGTACTAGCTGAGCTACTAACAGGAAAGAAGGCACTATCTTCTGACAGGTCAGAAGTTGATAGAAACCTTGCGGCGTACTTTGGTTCTTCAATGAAACAGGGTCAGTTACTTCATATTTTGGACAAAAGTATAGATGAGGCAAATATTGAGCAACTAAAAGAGGTTGCCCATATTACAGAACGATGTTTACGGGTGAAGGGCGAGGACAGACCCACCATGAAAGAAGTAGCAATGGAACTAGAGGGAATATCAGTTATTGAAGAGCATCGTTGGGGAAGTGACAATTTGCCTTCAGAAGAGACTGAGAACTTGCTCAAAACAGCACGATCAGTTAAAAATATTGAAGATGGCATCGGTGGAAGTGGCATTATTAATTCATCTGATTCATATAGCTTAAACCAGATCTCAATATCGATTGGTGGAAGATGA 1374 0.3952 METYGCVKGATCKNLLGSYNCSCPPGYEGDGKNKGTGCIKKLSTEQRKEIILIIALSVSLSLLALLVGSFYAYFALKKRKLVKLKEQFFQQNGGLLLQQQIRRHGGSTETTKVFTLEELKEATNNFDEGKILGQGGQGIVYKGVLQDKRIVAIKKSKINDPDQIEPFINEVVILSQINHRNVVKLFGCCLETEVPLLVYEFIPNGTVHEHLHDQNQSIKLTWKTRLRIAKETAAVLAYLHSAAATPIIHRDVKSTNILLDHNLTAKVSDFGASRIVPLDHSQINTLVQGTLGYLDPEYLLTSQLTEKSDVYSFGVVLAELLTGKKALSSDRSEVDRNLAAYFGSSMKQGQLLHILDKSIDEANIEQLKEVAHITERCLRVKGEDRPTMKEVAMELEGISVIEEHRWGSDNLPSEETENLLKTARSVKNIEDGIGGSGIINSSDSYSLNQISISIGGR 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03911 457 FunFam Wall-associated receptor kinase 2 96 201 - -
Trre6g03911 457 Pfam Protein kinase domain 127 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g03911 457 ProSitePatterns Serine/Threonine protein kinases active-site signature. 247 259 IPR008271 GO:0004672|GO:0006468
Trre6g03911 457 CDD EGF_CA 6 30 - -
Trre6g03911 457 SMART egfca_6 5 39 IPR001881 GO:0005509
Trre6g03911 457 Pfam EGF domain 3 32 IPR024731 -
Trre6g03911 457 SUPERFAMILY EGF/Laminin 5 33 - -
Trre6g03911 457 CDD STKc_IRAK 132 398 - -
Trre6g03911 457 SUPERFAMILY Protein kinase-like (PK-like) 108 400 IPR011009 -
Trre6g03911 457 FunFam Wall-associated receptor kinase 2 202 418 - -
Trre6g03911 457 Gene3D Laminin 1 45 - -
Trre6g03911 457 Gene3D Transferase(Phosphotransferase) domain 1 202 414 - -
Trre6g03911 457 SMART serkin_6 126 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g03911 457 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 8 399 IPR045274 GO:0007166
Trre6g03911 457 ProSiteProfiles Protein kinase domain profile. 126 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g03911 457 Gene3D Phosphorylase Kinase; domain 1 100 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03911 Trre-Chr6 41148837 41150599 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03911 4 420 Receptor kinase-like Gene Family AT1G21230 52.983 9.88e-147 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Trre6g03911 Pkinase 9.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03911 - - gmx:100798027 619.387