Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03910 ATGAAACTGACAAATTATTATATAGATATTAATGAATGCATGGAGACGTATGGTTGTGTTAAGGGAGCAACATGCAAAAATCTTCTTGGAAGTTACAATTGTTCATGCCCACCAGGATATGAGGGAGACGGGAAAAATAAAGGAACAGGATGCATTAAAAAATTGAGCACCGAACAAAGGAAAGAGATCATATTGATCATCGCATTGAGTGTCAGCTTAAGCCTCCTAGCACTACTGGTTGGAAGTTTTTATGCATATTTTGCATTAAAGAAAAGAAAGCTCGTTAAACTTAAAGAACAATTTTTTCAACAAAACGGTGGCTTACTGTTACAACAACAGATACGGAGGCATGGAGGATCAACTGAAACAACAAAAGTCTTCACTCTTGAGGAGCTAAAAGAAGCTACCAACAACTTCGATGAAGGAAAGATCCTAGGACAAGGAGGTCAGGGAATAGTTTACAAAGGAGTTTTACAAGATAAAAGAATTGTAGCGATAAAAAAGTCCAAAATCAATGACCCAGACCAGATTGAGCCATTCATCAATGAAGTGGTCATTCTTTCCCAAATCAACCACAGAAATGTGGTAAAGCTTTTTGGTTGTTGTCTAGAGACAGAAGTTCCCTTGCTTGTTTATGAATTCATTCCCAATGGCACTGTTCATGAGCATTTGCATGATCAAAACCAATCTATAAAGCTTACATGGAAAACAAGATTAAGAATAGCAAAAGAAACAGCTGCTGTCCTGGCATACCTACATTCTGCTGCTGCTACACCTATCATACATAGAGATGTGAAATCTACAAATATACTCCTAGATCACAATCTCACTGCAAAGGTTTCTGACTTTGGAGCTTCAAGGATTGTTCCTCTTGATCATAGTCAGATAAACACTCTAGTGCAGGGGACATTGGGGTATCTTGACCCAGAATACCTCCTCACAAGCCAGTTAACAGAGAAGAGTGATGTTTATAGTTTTGGGGTGGTACTAGCTGAGCTACTAACAGGAAAGAAGGCACTATCTTCTGACAGGTCAGAAGTTGATAGAAACCTTGCGGCGTACTTTGGTTCTTCAATGAAACAGGGTCAGTTACTTCATATTTTGGACAAAAGTATAGATGAGGCAAATATTGAGCAACTAAAAGAGGTTGCCCATATTACAGAACGATGTTTACGGGTGAAGGGCGAGGACAGACCCACCATGAAAGAAGTAGCAATGGAACTAGAGGGAATATCAGTTATTGAAGAGCATCGTTGGGGAAGTGACAATTTGCCTTCAGAAGAGACTGAGAACTTGCTCAAAACAGCACGATCAGTTAAAAATATTGAAGATGGCATCGGTGGAAGTGGCATTATTAATTCATCTGATTCATATAGCTTAAACCAGATCTCAATATCGATTGGTGGAAGATGA 1413 0.39 MKLTNYYIDINECMETYGCVKGATCKNLLGSYNCSCPPGYEGDGKNKGTGCIKKLSTEQRKEIILIIALSVSLSLLALLVGSFYAYFALKKRKLVKLKEQFFQQNGGLLLQQQIRRHGGSTETTKVFTLEELKEATNNFDEGKILGQGGQGIVYKGVLQDKRIVAIKKSKINDPDQIEPFINEVVILSQINHRNVVKLFGCCLETEVPLLVYEFIPNGTVHEHLHDQNQSIKLTWKTRLRIAKETAAVLAYLHSAAATPIIHRDVKSTNILLDHNLTAKVSDFGASRIVPLDHSQINTLVQGTLGYLDPEYLLTSQLTEKSDVYSFGVVLAELLTGKKALSSDRSEVDRNLAAYFGSSMKQGQLLHILDKSIDEANIEQLKEVAHITERCLRVKGEDRPTMKEVAMELEGISVIEEHRWGSDNLPSEETENLLKTARSVKNIEDGIGGSGIINSSDSYSLNQISISIGGR 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03910 470 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672|GO:0006468
Trre6g03910 470 FunFam Fibrillin 2 5 47 - -
Trre6g03910 470 SMART egfca_6 9 52 IPR001881 GO:0005509
Trre6g03910 470 CDD EGF_CA 9 43 - -
Trre6g03910 470 Gene3D Transferase(Phosphotransferase) domain 1 215 427 - -
Trre6g03910 470 CDD STKc_IRAK 145 411 - -
Trre6g03910 470 Gene3D Phosphorylase Kinase; domain 1 113 214 - -
Trre6g03910 470 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 17 412 IPR045274 GO:0007166
Trre6g03910 470 Pfam Protein kinase domain 140 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g03910 470 ProSitePatterns Calcium-binding EGF-like domain signature. 9 34 IPR018097 GO:0005509
Trre6g03910 470 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 25 36 IPR000152 -
Trre6g03910 470 Pfam Calcium-binding EGF domain 9 48 IPR001881 GO:0005509
Trre6g03910 470 Gene3D Laminin 8 53 - -
Trre6g03910 470 ProSiteProfiles EGF-like domain profile. 9 46 IPR000742 -
Trre6g03910 470 SMART egf_5 12 52 IPR000742 -
Trre6g03910 470 SUPERFAMILY Protein kinase-like (PK-like) 121 413 IPR011009 -
Trre6g03910 470 ProSiteProfiles Protein kinase domain profile. 139 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g03910 470 SUPERFAMILY EGF/Laminin 8 46 - -
Trre6g03910 470 FunFam Wall-associated receptor kinase 2 215 431 - -
Trre6g03910 470 FunFam Wall-associated receptor kinase 2 109 214 - -
Trre6g03910 470 SMART serkin_6 139 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03910 Trre-Chr6 41148798 41150599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03910 9 433 Receptor kinase-like Gene Family AT1G21230 53.037 5.92e-149 440
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Trre6g03910 Pkinase 1.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03910 - - gmx:100798027 627.861