Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03886 ATGGGAATTGAGGAAGGAGCAAGTAGTCCTGGTAATACTGAATGTGCTGAAGGAGTTCAGTGTTTGAAACGCAAAGCTATTTCTGATGAGGTACTGATTTCAAATGGAAATGGTGTTGTTAAAGAGGCTCGATGCTCGAAAAGTGAAGAGGTGAATGATGGGGCTGTAATTTCCAATGGAAATTGTGTTGCTGAAAAGGTTCGGCACTTGGAAAGTGAAGCCATGAGTGATGAGGTGCCAATTTCAAATGGAAATGGGGTTGTTGAAGCGGCTCAACACTTGGAAAGTGAAGCCATGAGTAGTGATGAGGCTGTAATTTCCAATGGGAATGGTGTTGCTGAAGAGGATCGGCACTTGAAGAGTGAAGTCGTGAATGATGGGGCAGTGTTAGTGAATGTAAATGGTGCTGCTGAAGTGACTGAGGTTTTGAATAGTGATGGCTTGAATAATGGGGCGAATGTAAACGGTGTTACTGAAGAGGATGGAGGCTTGAAAAGTGAACCCATTAGCAACGGGGCAGCGATTTCAGATGGGTTTGATTCTGTTGACGGGGGATCTTGTGGTGTTACATGTCTTCGCACTTATAAGAGGCGAAAATATGATAAGTCAAGTTCAAAAGGAAAAGCTCAGGAGGATTACAAAAAATGCGTGGAAACTGCAAGTCATATAGCAGACCAGGTTGCAAAAGAACCCTTTGATGCAACTTTAGGCAATACTGCAGATGATTGTGACCATAGACGTTGGGGAAATGTTGTACTGAAGCATTTACATCAGTCACTAGGCAGTGCCAATGGTGGCATATGGGAAGCTAACGGGTATGCACCTGTCATGCAAAATGGATCTTCTAGTGAATCCCAAGACCATGGTGGTACTGAGATGTGTCAGCGTATGCTACACGATGTATTAACCTCAGAGGAATTCAATTCATTATGCAAGACTATATTTGAAAATTTCCATGGAATCAAGCCCGAAAGTGTAGTTGATTTTAGTGTCATAATCTCAAGGATGAAGCAGAAATTTTATGAAAGAGCACCTGAACTTTTCTTGTCAGATATTCAACAGGTCTGGAGAAAGCTTCAAAATACTTCTAACAAAATATTTGCATTTTCTAAGAGCCTGTGCGACTTGTCAACTACTTCCTACTCTGAGCTGGTTGAAATTTCAGCGCAGAGCACATTTGAAGATGAAAAGCAAGTGGAATCGGACGGTCACATGAAACCGGAGCAGATGGAAGAATGCGCTATCTATAAAACTTGCCGTTGCAGTTGTTGCAGAGAAAGGGTAGATGGCACAGACTGTTTGGTCTGTGACTCATGCGAGAAGGTGTACCATTTGTCCTGCATTGAGCCTGCAGTGAAAGAAATACCTCACAAAAGCTGGTATTGTGCTAATTGCACCACAAGTGGCATTGGGTCTCCACATGAGAATTGTGTAGTATGTGCGAGGTTGAATGGAAAAAAGACTCCCAAGAAAATAATTGGTGATGAAAGCCTCCCTACAAATGAGGAAACATTTAATGAATTTGAAGAGAATTCAAATAGCAGCTATGCTGGGATTCAAGTATCTACACGTAAGAGAAAAATATTCAATTGCAGAGTCTGTGAAAATGAAGTCGAAGTCAAAGGTGAAGAAATAAGAGAATGTGGTCACCCTTATTGCCACAGTCAATATTACCATGTAAGGTGTTTGACAAGCAAACAATTAAATATATATAGTTATCAATGGTACTGCCCTTCTTGTATATGCCAAGCTTGCCTCACTAATCAAGATGATGATCGAATTGTCCTCTGCGATGGCTGCGATCATGGATATCACATCTATTGCATGAAACCTCCACGAGTTTCTATTCCACAAGGGAAATGGTTTTGCAGAAAATGTGATGCTGGAATCAAGGCAATATCCCAGGCAAAAAAGGCGTATGAGAGTAACAGGCCAAGAACCGGTGAATATGTTTCGAAGACAAATGCTAATAACAAAAACAATTGCAACAATAAATGTGTAGAAGAATCAGAAAGTGTTGGAGGAATGGACATGCTTTTAACTGCAGCCCATTGTCTTAATTTTGAAGAGAATTTGTCCGAAACCCAGTTTGAGTAG 2097 0.4115 MGIEEGASSPGNTECAEGVQCLKRKAISDEVLISNGNGVVKEARCSKSEEVNDGAVISNGNCVAEKVRHLESEAMSDEVPISNGNGVVEAAQHLESEAMSSDEAVISNGNGVAEEDRHLKSEVVNDGAVLVNVNGAAEVTEVLNSDGLNNGANVNGVTEEDGGLKSEPISNGAAISDGFDSVDGGSCGVTCLRTYKRRKYDKSSSKGKAQEDYKKCVETASHIADQVAKEPFDATLGNTADDCDHRRWGNVVLKHLHQSLGSANGGIWEANGYAPVMQNGSSSESQDHGGTEMCQRMLHDVLTSEEFNSLCKTIFENFHGIKPESVVDFSVIISRMKQKFYERAPELFLSDIQQVWRKLQNTSNKIFAFSKSLCDLSTTSYSELVEISAQSTFEDEKQVESDGHMKPEQMEECAIYKTCRCSCCRERVDGTDCLVCDSCEKVYHLSCIEPAVKEIPHKSWYCANCTTSGIGSPHENCVVCARLNGKKTPKKIIGDESLPTNEETFNEFEENSNSSYAGIQVSTRKRKIFNCRVCENEVEVKGEEIRECGHPYCHSQYYHVRCLTSKQLNIYSYQWYCPSCICQACLTNQDDDRIVLCDGCDHGYHIYCMKPPRVSIPQGKWFCRKCDAGIKAISQAKKAYESNRPRTGEYVSKTNANNKNNCNNKCVEESESVGGMDMLLTAAHCLNFEENLSETQFE 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03886 698 ProSiteProfiles Zinc finger PHD-type profile. 418 468 IPR019787 -
Trre6g03886 698 Pfam PHD-finger 581 627 IPR019787 -
Trre6g03886 698 Pfam PHD-finger 420 467 IPR019787 -
Trre6g03886 698 ProSiteProfiles Zinc finger PHD-type profile. 579 629 IPR019787 -
Trre6g03886 698 SUPERFAMILY FYVE/PHD zinc finger 404 466 IPR011011 -
Trre6g03886 698 SMART PHD_3 530 581 IPR001965 -
Trre6g03886 698 SMART PHD_3 420 466 IPR001965 -
Trre6g03886 698 SMART PHD_3 584 627 IPR001965 -
Trre6g03886 698 ProSitePatterns Zinc finger PHD-type signature. 577 626 IPR019786 -
Trre6g03886 698 Gene3D - 326 468 - -
Trre6g03886 698 FunFam PHD finger protein EHD3 isoform A 312 469 - -
Trre6g03886 698 SUPERFAMILY FYVE/PHD zinc finger 581 631 IPR011011 -
Trre6g03886 698 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 523 635 IPR013083 -
Trre6g03886 698 PANTHER OS02G0192300 PROTEIN 406 512 - -
Trre6g03886 698 ProSiteProfiles Zinc finger RING-type profile. 531 580 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03886 Trre-Chr6 40734962 40742217 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03886 581 648 C2H2 Transcription Factor Family AT3G01460 39.706 1.21e-13 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre6g03886 PHD 1.8e-12 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03886 - - tpra:123909384 1149.81