Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03885 ATGGGAATTGAGGAAGGAGCAAGTAGTCCTGGTAATACTGAATGTGCTGAAGGAGTTCAGTGTTTGAAACGCAAAGCTATTTCTGATGAGGTACTGATTTCAAATGGAAATGGTGTTGTTAAAGAGGCTCGATGCTCGAAAAGTGAAGAGGTGAATGATGGGGCTGTAATTTCCAATGGAAATTGTGTTGCTGAAAAGGTTCGGCACTTGGAAAGTGAAGCCATGAGTGATGAGGTGCCAATTTCAAATGGAAATGGGGTTGTTGAAGCGGCTCAACACTTGGAAAGTGAAGCCATGAGTAGTGATGAGGCTGTAATTTCCAATGGGAATGGTGTTGCTGAAGAGGATCGGCACTTGAAGAGTGAAGTCGTGAATGATGGGGCAGTGTTAGTGAATGTAAATGGTGCTGCTGAAGTGACTGAGGTTTTGAATAGTGATGGCTTGAATAATGGGGCGAATGTAAACGGTGTTACTGAAGAGGATGGAGGCTTGAAAAGTGAACCCATTAGCAACGGGGCAGCGATTTCAGATGGGTTTGATTCTGTTGACGGGGGATCTTGTGGTGTTACATGTCTTCGCACTTATAAGAGGCGAAAATATGATAAGTCAAGTTCAAAAGGAAAAGCTCAGGAGGATTACAAAAAATGCGTGGAAACTGCAAGTCATATAGCAGACCAGGTTGCAAAAGAACCCTTTGATGCAACTTTAGGCAATACTGCAGATGATTGTGACCATAGACGTTGGGGAAATGTTGTACTGAAGCATTTACATCAGTCACTAGGCAGTGCCAATGGTGGCATATGGGAAGCTAACGGGTATGCACCTGTCATGCAAAATGGATCTTCTAGTGAATCCCAAGACCATGGTGGTACTGAGATGTGTCAGCGTATGCTACACGATGTATTAACCTCAGAGGAATTCAATTCATTATGCAAGACTATATTTGAAAATTTCCATGGAATCAAGCCCGAAAGTGTAGTTGATTTTAGTGTCATAATCTCAAGGATGAAGCAGAAATTTTATGAAAGAGCACCTGAACTTTTCTTGTCAGATATTCAACAGGTCTGGAGAAAGCTTCAAAATACTTCTAACAAAATATTTGCATTTTCTAAGAGCCTGTGCGACTTGTCAACTACTTCCTACTCTGAGCTGGTTGAAATTTCAGCGCAGAGCACATTTGAAGATGAAAAGCAAGTGTTCTTTTACCAGGAATCGGACGGTCACATGAAACCGGAGCAGATGGAAGAATGCGCTATCTATAAAACTTGCCGTTGCAGTTGTTGCAGAGAAAGGGTAGATGGCACAGACTGTTTGGTCTGTGACTCATGCGAGAAGGTGTACCATTTGTCCTGCATTGAGCCTGCAGTGAAAGAAATACCTCACAAAAGCTGGTATTGTGCTAATTGCACCACAAGTGGCATTGGGTCTCCACATGAGAATTGTGTAGTATGTGCGAGGTTGAATGGAAAAAAGACTCCCAAGAAAATAATTGGTGATGAAAGCCTCCCTACAAATGAGGAAACATTTAATGAATTTGAAGAGAATTCAAATAGCAGCTATGCTGGGATTCAAGTATCTACACGTAAGAGAAAAATATTCAATTGCAGAGTCTGTGAAAATGAAGTCGAAGTCAAAGGTGAAGAAATAAGAGAATGTGGTCACCCTTATTGCCACAGTCAATATTACCATGTAAGGTGTTTGACAAGCAAACAATTAAATATATATAGTTATCAATGGTACTGCCCTTCTTGTATATGCCAAGCTTGCCTCACTAATCAAGATGATGATCGAATTGTCCTCTGCGATGGCTGCGATCATGGATATCACATCTATTGCATGAAACCTCCACGAGTTTCTATTCCACAAGGGAAATGGTTTTGCAGAAAATGTGATGCTGGAATCAAGGCAATATCCCAGGCAAAAAAGGCGTATGAGAGTAACAGGCCAAGAACCGGTGAATATGTTTCGAAGACAAATGCTAATAACAAAAACAATTGCAACAATAAATGTGTAGAAGAATCAGAAAGTGTTGGAGGAATGGACATGCTTTTAACTGCAGCCCATTGTCTTAATTTTGAAGAGAATTTGTCCGAAACCCAGTTTGAGTAG 2109 0.4111 MGIEEGASSPGNTECAEGVQCLKRKAISDEVLISNGNGVVKEARCSKSEEVNDGAVISNGNCVAEKVRHLESEAMSDEVPISNGNGVVEAAQHLESEAMSSDEAVISNGNGVAEEDRHLKSEVVNDGAVLVNVNGAAEVTEVLNSDGLNNGANVNGVTEEDGGLKSEPISNGAAISDGFDSVDGGSCGVTCLRTYKRRKYDKSSSKGKAQEDYKKCVETASHIADQVAKEPFDATLGNTADDCDHRRWGNVVLKHLHQSLGSANGGIWEANGYAPVMQNGSSSESQDHGGTEMCQRMLHDVLTSEEFNSLCKTIFENFHGIKPESVVDFSVIISRMKQKFYERAPELFLSDIQQVWRKLQNTSNKIFAFSKSLCDLSTTSYSELVEISAQSTFEDEKQVFFYQESDGHMKPEQMEECAIYKTCRCSCCRERVDGTDCLVCDSCEKVYHLSCIEPAVKEIPHKSWYCANCTTSGIGSPHENCVVCARLNGKKTPKKIIGDESLPTNEETFNEFEENSNSSYAGIQVSTRKRKIFNCRVCENEVEVKGEEIRECGHPYCHSQYYHVRCLTSKQLNIYSYQWYCPSCICQACLTNQDDDRIVLCDGCDHGYHIYCMKPPRVSIPQGKWFCRKCDAGIKAISQAKKAYESNRPRTGEYVSKTNANNKNNCNNKCVEESESVGGMDMLLTAAHCLNFEENLSETQFE 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03885 702 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 527 639 IPR013083 -
Trre6g03885 702 PANTHER OS02G0192300 PROTEIN 410 516 - -
Trre6g03885 702 ProSiteProfiles Zinc finger RING-type profile. 535 584 IPR001841 -
Trre6g03885 702 SUPERFAMILY FYVE/PHD zinc finger 414 470 IPR011011 -
Trre6g03885 702 ProSitePatterns Zinc finger PHD-type signature. 581 630 IPR019786 -
Trre6g03885 702 SMART PHD_3 588 631 IPR001965 -
Trre6g03885 702 SMART PHD_3 534 585 IPR001965 -
Trre6g03885 702 SMART PHD_3 424 470 IPR001965 -
Trre6g03885 702 Pfam PHD-finger 585 631 IPR019787 -
Trre6g03885 702 Pfam PHD-finger 424 471 IPR019787 -
Trre6g03885 702 SUPERFAMILY FYVE/PHD zinc finger 585 635 IPR011011 -
Trre6g03885 702 Gene3D - 342 472 - -
Trre6g03885 702 ProSiteProfiles Zinc finger PHD-type profile. 422 472 IPR019787 -
Trre6g03885 702 ProSiteProfiles Zinc finger PHD-type profile. 583 633 IPR019787 -
Trre6g03885 702 FunFam PHD finger protein EHD3 isoform A 312 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03885 Trre-Chr6 40734962 40742217 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03885 585 652 C2H2 Transcription Factor Family AT3G01460 39.706 1.25e-13 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre6g03885 PHD 1.8e-12 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03885 - - tpra:123909384 1144.03