Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03881 ATGCCACGCCATCGTTGCACAGTGTACTCCGAGAGCGATTACGACGACGACGATAACGTCACCATGAGGTGTCTTTCTTGCGAGGAAGATTACGATCCCGACGATGCCGGCACCTGCAAAGAATGCTACGACGAAGCTAACGCCTACGAAGAAGAACTCAAACGTCAGATCCAAGACCTCAAATCTAAAGTCTCCTTCCTCGCTCTTTCTTCTCCACTAGATGCTCCTTCCACCACCGATCTCGTCCTTCTTCCCTCCACCGATGCTTTCTCTCCTTCCATTCCTGCTCACAAGGCCGTTCTCGTTAGTCGCTCTCCAGTTTTCAGAGCCATGCTAGAGAATGATATGGAGGAAAGCCGGAGTGGCACCATCAAAATTGCTGATGTATCATACGATGCCCTTCGTGCCTTTGTTAACTACTTATACACTGCTGAAGCATTCCTTGATAACCAAATGGCCTGCAACCTATTAGTTCTAGCAGAAAAGTATCAAGTGAAGCATCTTAAGGCATATTGTGAGAAGTATTTGATCTCCAAACTGAATTGGGAGAAAGCTATTGTGAACTTTGCTTTTGCACATCAACACAATGCTAACCAATTGCAAGATGCAGCCTTGGCTGTGATCATGGAGAATATGGACAACCTCACTAAAAATGAAGATTATACAGAGTTAGTGGACAGTAATCCTCGACTTGTTGTGGAAATTTATGAAGCATATCTTTCCAAACAGGTTAATACTGCAGCCACACTCCTATAG 756 0.4497 MPRHRCTVYSESDYDDDDNVTMRCLSCEEDYDPDDAGTCKECYDEANAYEEELKRQIQDLKSKVSFLALSSPLDAPSTTDLVLLPSTDAFSPSIPAHKAVLVSRSPVFRAMLENDMEESRSGTIKIADVSYDALRAFVNYLYTAEAFLDNQMACNLLVLAEKYQVKHLKAYCEKYLISKLNWEKAIVNFAFAHQHNANQLQDAALAVIMENMDNLTKNEDYTELVDSNPRLVVEIYEAYLSKQVNTAATLL 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03881 251 PANTHER SPECKLE-TYPE POZ PROTEIN 47 245 - -
Trre6g03881 251 SUPERFAMILY POZ domain 79 178 IPR011333 -
Trre6g03881 251 FunFam BTB/POZ domain-containing protein 182 250 - -
Trre6g03881 251 CDD BTB_POZ_ZBTB_KLHL-like 93 163 - -
Trre6g03881 251 Coils Coil 39 70 - -
Trre6g03881 251 Gene3D Potassium Channel Kv1.1; Chain A 46 180 IPR011333 -
Trre6g03881 251 Gene3D - 181 249 - -
Trre6g03881 251 SMART BTB_4 79 180 IPR000210 GO:0005515
Trre6g03881 251 ProSiteProfiles BTB domain profile. 79 150 IPR000210 GO:0005515
Trre6g03881 251 Pfam BTB/POZ domain 75 179 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03881 Trre-Chr6 40699775 40701744 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Trre6g03881 BTB 5.3e-23 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03881 K10523 - zju:107421125 341.273