LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre6g03877	ATGCAAAAATCTTCTCCCGACGGCGGCTCCGGTTGCCGTACGGTGGTGGTCGGAGTAAAAATGGATTCTCCAAGCAAAGAGCTTCTCACTTGGGCTTTGGTTAAAGTTGCTCAACCTGGTGATCTCGTTGTTGCTCTGCATGTTCTTGGGACAAATGAAATTGTTAATGGAGATGGGAAATCGTCGCTGCTTTCTCTTGTTAAGGCATTTGACTCTGTTCTGAATGTTTATGAAGGATTCTGCAATTTGAAGCAGGTGGATCTTAAGCTAAAAATTTGTCGTGGTTCATCGGTGAAGAAAATTTTGGTACGAGAAGCAAATGCTTATTCTGCAACTCATGTTATTGTTGGAAGTGTTCATAGACACCATAGAATCCGGTCATCTAGCTCTGTAGCTAAGTACTGTGCTAGAAAGTTATCTAAGGACTGTTGTATTCTTGCTGTTAATAATGGGAAAGTTGTGTTTCAGCGCGACAGCTTGGCAGTATCAACTCCTGTTGCTGATGTACAAGGGTTGGATCGTCATCACGGAAATGGTTTGCTTGGAACAATTCATTGCACACTAAGTAAGAGTACAAAAGTACAAAATGATGATGCTGATGAGGGAACCAGACGAATTTCGGATCACAGTTTAGCTAAGGTTTTACTTGATTCTACCGAAAATGTTAAAAATCAAAGTTGCTCAATTTGTGGCGCATTGCAAGACACTTCTTGCCACCAATCTGCAGAAGAGCCTTCAGAAGGATCTGAACGCTCTTCTGTTGATGGTGGCAATGAGAATTCTTTGGCAATAGTGCCTGTACAGACCATTGATGCCGGACAACCTGAAATGAAACCCGGTTGGCCGCTACTACACCGGAAAATTTTATCAGAAAGGCAATTACTTGATAAACCGTTCATGCGGCACCAGACCTCTGTGGTCCAGTGGGCAATGAAGTTGCCGCGCAGAGATATTTCATATCATGTTGATCATATTCAGGATCAATCTGTGGCTTTAAATAGTGAAAGCGGTGCTCTTATTCCTGTTGTAGACTTGGAAATAGGGAAATCTTATTCGTCGCCTGAATGCAATTTAAAAATTATACCTAAAGAATTGGAGGTACTTCATGAGAAATACTCATCAACATGCAGATTGTTCGAGTACCAAGAACTTGTATCAGCGACATCAAATTTTTTGCCTGAAAACTTGATCGGTAAAGGAGGAAGTAGTATGGTTTATCGAGGCTGCCTCCGTGATGGAAAGGAACTTGCTGTCAAGATCCTAAAGCCTTCTTATGATGTTTTGAAAGAATTTCTTTTGGAAATAGAAATCATAACTACATTGCATCACAAAAACATTATTACGCTCCTTGGTTTCTGCTTTGAGAATGGCAATCTTCTTCTGGTTTATGATTTCTTATCAAGAGGAAGCCTTGAAGAGAACATTCACGGGACTAAGAAAAACCCCGGCGAGTTCGGTTGGATGCAGAGATATAAGGTTGCAACAGGTGTTGCTGAGGCTTTGGATTATCTGCATTGTAAAGATGATCAGCCTGTGATCCATCGGGATGTAAAATCATCAAATGTATTACTATCCGAAGATTTTAAACCTCAGCTTTCTGATTTTGGATTGGCTACGTGGGCGTCAACCTCATCATCGTATATAACATGCACGGATGTTGCCGGAACCTTTGGTTATATGGCTCCTGAATACTTCATGTACGGCAAAGTAAGTGATAAGATCGATGTCTATGCGTTTGGTGTCGTGCTGCTTGAGCTTCTTTCAGGGAGAAAGCCCATAAGTGATGATTTTCCAAAAGGTCAACAGAATCTTGTTATGTGGGCAAGTCCGCTTCTAAATAGCGGAAAGGTGTCAGAATTGTTAGATCCTAGTTTGGGTGATAACTATGATCATGAGGAGATGGAAAGGATGGTCTTAGCAGCCACACTTTGTATCAAACGTGCTCCAAAAGCTAGACCTCAAATGAGCATTGTATCAAAGCTACTTCAAGGCGATATTGACGCGATCAAGTGGGCAAAGGTGGAAGTCAATACTTTGGAAGCACACGAAATGCTCGATGATGAAGCATGTCCACCAAGTAATTTACAGTCACATCTTAATCTTGCACTGCTTGATGTGGAAGATGACTCACTCTCCATGTATAGTGTTGAGCAAAGTGTGTCACTTGAAGACTACTTGAGAGGCAGGTGGAGCCGATCATCAAGTTTTGACTGA	2214	0.4169	MQKSSPDGGSGCRTVVVGVKMDSPSKELLTWALVKVAQPGDLVVALHVLGTNEIVNGDGKSSLLSLVKAFDSVLNVYEGFCNLKQVDLKLKICRGSSVKKILVREANAYSATHVIVGSVHRHHRIRSSSSVAKYCARKLSKDCCILAVNNGKVVFQRDSLAVSTPVADVQGLDRHHGNGLLGTIHCTLSKSTKVQNDDADEGTRRISDHSLAKVLLDSTENVKNQSCSICGALQDTSCHQSAEEPSEGSERSSVDGGNENSLAIVPVQTIDAGQPEMKPGWPLLHRKILSERQLLDKPFMRHQTSVVQWAMKLPRRDISYHVDHIQDQSVALNSESGALIPVVDLEIGKSYSSPECNLKIIPKELEVLHEKYSSTCRLFEYQELVSATSNFLPENLIGKGGSSMVYRGCLRDGKELAVKILKPSYDVLKEFLLEIEIITTLHHKNIITLLGFCFENGNLLLVYDFLSRGSLEENIHGTKKNPGEFGWMQRYKVATGVAEALDYLHCKDDQPVIHRDVKSSNVLLSEDFKPQLSDFGLATWASTSSSYITCTDVAGTFGYMAPEYFMYGKVSDKIDVYAFGVVLLELLSGRKPISDDFPKGQQNLVMWASPLLNSGKVSELLDPSLGDNYDHEEMERMVLAATLCIKRAPKARPQMSIVSKLLQGDIDAIKWAKVEVNTLEAHEMLDDEACPPSNLQSHLNLALLDVEDDSLSMYSVEQSVSLEDYLRGRWSRSSSFD	737

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre6g03877	737	PANTHER	OS08G0249100 PROTEIN	73	673	IPR046958	-
	Trre6g03877	737	ProSitePatterns	Protein kinases ATP-binding region signature.	397	419	IPR017441	GO:0005524
	Trre6g03877	737	SMART	serkin_6	391	672	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre6g03877	737	FunFam	Putative receptor-like serine/threonine-protein kinase	466	678	-	-
	Trre6g03877	737	CDD	STKc_IRAK	397	664	-	-
	Trre6g03877	737	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	512	524	IPR008271	GO:0004672\|GO:0006468
	Trre6g03877	737	Pfam	Protein kinase domain	395	605	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre6g03877	737	FunFam	probable receptor-like serine/threonine-protein kinase At5g57670	360	465	-	-
	Trre6g03877	737	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	13	147	-	-
	Trre6g03877	737	MobiDBLite	consensus disorder prediction	240	259	-	-
	Trre6g03877	737	CDD	USP_Like	14	148	-	-
	Trre6g03877	737	Gene3D	Transferase(Phosphotransferase) domain 1	466	679	-	-
	Trre6g03877	737	Gene3D	HUPs	12	150	IPR014729	-
	Trre6g03877	737	Gene3D	Phosphorylase Kinase; domain 1	358	465	-	-
	Trre6g03877	737	FunFam	probable receptor-like serine/threonine-protein kinase At5g57670	12	149	-	-
	Trre6g03877	737	ProSiteProfiles	Protein kinase domain profile.	391	685	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre6g03877	737	SUPERFAMILY	Protein kinase-like (PK-like)	372	661	IPR011009	-
	Trre6g03877	737	Pfam	Universal stress protein family	13	144	IPR006016	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre6g03877	Trre-Chr6	40671876	40675226	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre6g03877	378	658	Trihelix Transcription Factor Family	AT1G68690	45.645	5.33e-72	245

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VI	Trre6g03877		Pkinase	2.9e-43	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre6g03877	-		-	pcin:129303222	999.579