Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03874 ATGGGGTCGTGTGGTGAGCCTGCAATTGTTGTTGATCCATCTGGTTTGTCTGTAATGGAGCAGCCTTTCAGCTCGGAGTTAGATTCTGTGCAGGAGTTGTGCTCAGAGGAAGCTTGCAATGGTGTGGTTGATGGTTCTGTGGGAGAGGCTCATGTGAGTTGTTCTGTAAGCTTTGTTGATGTTGCCGAGGGGTCCGGAGATGCTTTCAAAAATGAGTGTGAAAATGGTGATATGTTAAAAAAATTGGACAAAGCTGTTGAAGATGATTGTGGGAATAGTTTGGGGATTTGTTCCGAAGACGTTGAAGTCTCTGACCTTAAAAGTGGTGGATTGTGCTCAGAAGGAAGTTTTCAAGATGAAGGCTACGTTGACTTTCCGTTGGAGTCAATAACCTCAAATAGTTTGCAGAAGCTTTGTGCTGAACAGGGTGAGCAGAAGGATGTCATTGAAGTTTCTGATCTTAAAAGTGGTGTATTGTGCTCAGAAGGAAATTTTCAAGATGAAGGCTACGTTGACATTCCGTTGGAGTCAATAACTTCGGATAATTTGCAGAAGCATTGTGCTGAACAGGGTGAGCAGAAGGATGTCATTGAAGTATCCGATCTTAAAAGTGGTGGATTGTGCTCAGAAGGAAATTTTCAAGATGGACACTACGTTGACCTTCCGTTGGAGTCAATAACCTCAAATAATTTGCAGAAGCATTGTGCTGAACAGGGTGAGAAGAAGGATGTCAAGAGCATAATTTTTCCCTCGGCAGGAGATGATTCGGAAGTTGTGGAAGGAAAAACCGATGGTGCTGATTTGCTAGCAGGTGCTGTCAACTGTGTGTTTGATGCCAGACAGTCTGAAGTGTGTTTGGAATCTGATTTCGTGACCGATTTGCTAGTTGATTACAACCAGGAAAATGAGCCAGAGGAGATCATGAGAAATGCAGATAGCATGCCAAGGGTTGTAGAAAATTGTGATGCTTTAGGTGGGATGGACACCAATTCTTGCAGGCAGATATCTCCTTCACTGGATGTGGAAGTGCCGTCAGGTGCCTTATATATAGATACAAAAGTAGAGAGCACAAGTGATATTCTACATGATCAGAAAAATGGCGAGGATTGTGACAGTACTCATGAAGAAAAGATAAGAACCGATGTTGATGCAGAAATCACTATTAATTCATATGTACAAGCAAATTCATCACCAGATTTCCAAAGGACTTCACCTGTAGTTGATTCACTATGTCAGCCCACCTTGCTGGATCAAGGGAGCGAATTAAAAAATGGCATATTGCAAACAGAAGATAATTTTTGTATATCAAAGGATTGTTCTGCAGATGTACTTGCCAACTCTACCATTAGAAAGCCATTTTATCCAGAATCGGGCCAGTCCTCTTTTGTATTAATCACCAACAGCTCTCCAAAGGATGTTCCGGATCTCCTTTCCAAGGGCGATGGTGTTTCCATCAACAATAATTGTGCTGTAGACAATCCTGGACAGACAAAAAATGATGGAAAAGAAGCTGTTGAAGTTGATTGTATCACTGAAAGCATACTGTTACCTTCTCAGAGGAGCAGCCAGAGAACCAAATTTGGTCGCAAGACACAAACCAGAAAGTCTTCTAGAAAATCCAAGAACAAAGCCAGTGTGACACATCCAGGTGGGGGTATGAAGATTAACTTAGAGGCTGCTAGAAAAAGAAGAAGCTGTTTATCCAAACCAGCTCGTTCTTCTGTCTGGGGATTGCTTGGCAATATTGAACAGTTTATTCAGCATGAAAATGAGCTTGAAGTTAGTGAAGCAATGGGCCAGAGTGAGGGTAAGGCTAGAAACGGGCATCAAGGTAGGAAAATGATTAAGAATGGTGCAAGTTCTAGCTCATTAAGTTCAGTTCAAAAGCATAATGTTTCAACTTCAACTACTCGTTTTCGTCTGAAGATTAAGTTTGGAAAAGAAAATGATTTACATTGCTCAAATGTTCTGGAGTCTGTTGGTGGCTTGGCTTCTGCTTCCTATTTGGGGTCTGATTCAGGTTCTCAGAAAGTAACCAACAATTCTGCAGATAAATTTTCCGAAGTGTCGGCTTTAAACAATTTAGAATCATTCAGAAAGGACCTGGACAAGGACTGTGTTGTTGTAAATGGACAAATTGTAAATAGCCAGTTAGAAAATTCTAAAATAACGGAGAAGTCAGATGGGGATGCAGAGGAACCATGTCACACAGTTCCTCCAGAGAGAGTGGTTGAAGAATTAGTTAAGCCAATTAATAATTCTGTTATAGAACCAGGAACATCACCTGATTCAGAAGTCATTGATTCAATTCCCGAAGTCCAGGTTGGAGAGAGACATGAAGATGTACATCTTGCTGTGTTAGGTTCTTCTAATGAGTTAAATTCTAATATGGATGTTACCTTTGGGAAGAGAGATAAGAAGAAAGACAATCTTATTTGTTCAGGCAATTGTATCACTGAAGATGGATCACAAGGTCAACTAGGGAATAATATAGTTAAGCATTCAAAGAATCACAGACGTAAGAAGAACTTCAAGGATGTGGTTAGCTCTTTAGAATTACCTACTTCCACTGAGCTAAGCAAATCTGTAAAGAGTAAAGAATTGGCTGCAGAATCATTGCCCCGTTCTGGAGAGGTTGTACTTGGAGTCTCTACCAAGGCTTTGAAAGTTAAAAGTGATGTGAATATCAAGACAGCTGGTAAAACATCTGGTGGCCATGGATTTTCTGAATTCCAGGCATCCCAGGATTTGCCGTCTTCTACAAGACCTTTGGGTCGTAAATTACCTAAAAGTTTTGAACCTATTGATGTTAGCACGGCCAAATCAAAAGCTTCTGATTCGACAAGCAGGAAAAAGACTACTACTGGACGCAAAGAGAAACAGAAAGAGCCAATTAACAAAAGTGAAGTCAAGGGAAAAGGTGTCTCTGTCAAAGTTACATCTGAAGTAGAAGATCACCTGCATCCAGATGTAGTTGGAAATCATAAGTTGGATGCTGTTGGAAAAATTGATCCAAGTGACAACAGTGTATCTGTCAATGTATCTAATTTAGACATGCAGCCTGGTTTTGGTTTGGGAGAACAACCTCAGTCACCGCGTAATGCATGGGTGAGTTGTGATGATTGTCACAAGTGGCGGCGTATTCCAGCTTTGCTTGCTGACCGGATTGATGAAACTAACTGCACCTGGACATGCAAGGACAGCAGTGATAAAGCCTTTGCTGATTGTGATATCCCTCAAGAAAAATCAAATGCAGAGATTAATGCAGAGTTAGGACTATCATATGCCTCTGGTGAAGAAGATGTATGCGAAGACTCCAAAAACTATAAGGAATTAGAATATCGACTACCATCGGTTTCCCAAGAGTCAACTTTTACCCGCATCTTCACCAATGAGTTTCTGCACCGCAACCCAAAAACTCAGACTATTGACGAGGTAATGGTTTGCCATTGCAAGCCACCTCCAGAAGGCAAGTTGGGATGTGGGGATGAATGTCTAAATCGGATGCTTAACATTGAATGTGTGCAAGGAACTTGCCCATGTGGGGATCGTTGCTCCAATCAGCAGTTCCAAAAACGCAGCTATTCCAGATTGAAGTGGTTTAAATGTGGGAAAAAAGGTTATGGGCTGAAGGCACTTGAGCGTGTAGCCAAAGGCCATTTCATTATTGAATATGTTGGAGAGGTCCTTGATATGCCTGCATATGAGGCACGTCAAAGAGAGTATGCTTTGAAGGGTCATAGACATTTCTATTTTATGACCTTGAACGGCAGTGAGGTGATTGATGCAAGCGCAAAAGGAAACTTGGGGCGTTTCATTAATCATAGTTGTGATCCCAATTGTCGGACAGAAAAGTGGATGGTGAATGGGGAGATCTGTATTGGACTGTTTGCATTGCGGAATATCAAGCAGGATGAAGAATTGACGTTTGATTACAACTATGTAAGGGTTTTTGGAGCTGCTGCCAAAAAATGCTATTGTGGTTCACCTCATTGTCGAGGTTATATAGGTGGTGGTGATCCACTTAATGCTGAGCTTATAGTTCATGGTGATTCTGATGATGAATATCCAGAACCCATGATGCTTACCAAAGATGGTGAAATTGAGGACAGCATACCTATGCCCTTTGATAATGTTGATACGGAGTCTTCTAGGCATGTATTAACGGACAGGGATGTATTGGACAAGTCTACAACTTCTATAGATGAAGATGGTTCTCCAGGGAAAGATAGTTCTGTGAACCCTGCCTCTGCTGTTTCCCTGTTGCACAGTTCAGTTGAAGTGGAAGACTCAAAAGGCAATTTACCATCTGATCAAATAGAAGAAATTTCTCAACAAATGGAGGATACAACAAGCAAGCCCATGCCTGCTGTCAGCAAAGTGTTGTCGAATTCTACTGATAGTAGAGAATCCAAGTCTGAAATGGGTGAAGGCGGGAATGGTGTTTCCCAATCACATATGCATGTCAAGAAGACTTCTAAACTAAATGCTTCTGTTAAAAAGGCTAAAGTCAGTGCTAATGCTGCAAATGGCCCTACAGCTGAGGTCGCAGCCAATCGATTGCCAGTGTCATCGATCAAACACAAAAAAGTAATCGAAGGTTCTTCCAATGGACGGTTTGAAGCAGTTCAGGGGAAACTTAATGAGTTGCTGGATGGAAATGGGGGAATAAGCAAAAGAAAAGACGCCACTAAAGGCTACTTGAAACTTTTGCTTCTCACCGTGGCTTCAGGTGATAGATACACTGGTGAAGCAATTCAAAGCAATCGAGATCTTTCCATGATCCTTGATGCTCTTCTGAAAACAAAATCTAGAGCCGTGCTGAATGATATAATTAGTAAAAATGGTTTACAGATGTTGCATAAGATCATGAAGCAGTACAGGCAAGACTTCAAAAAAATTCCAATACTGCGAAAGCTTCTTAAGGTCTTGGAGTACCTGGCAGAAGGCAAGGTTTTGACACCCGAACATATCAACAGTGGTCCTCCCTGTCGAGGAATGGAGAGTTTTAGGCGTTCAATGTTGTCTCTGACAGAGCATGATGACAAACAGGTCCATCAAATTGCTCGAAGCTTCCGAGACAGATGGATTCGCAGAAATGGCAGAAAACGTGGTCATATGGACAGGGATGATAATAGGGTGGAATCTCAGAGAAATTTCAACTCTAACAGATTTTCAGTATCACACAATCATAGGCACGAGCAGGGATTAAGACCTAAAGAAGAAATTGATTGCGGTCAGCAGTCTATGCTCGTGACAACTTCAACTTCAGTAGATGGTGGCTCCCAGGAGGGCTGCTCTACACCGTCTTTGGATGGAGTTGAGATTATCGGGGTAAAAAAGCGTAAGCGCAAAAGCCGATGGGATCAACCAGCAGAAACAAATTCATATTATGGTGCTGCTGTTATTGGCTCTACCAATGAAAGCCAGATCATGAATGAAGAACTTCCACCAGGGTTTTCATGTCCAGTACGTTCTTCAAACAGTGCACTAAACTCGGGCAGTCCTGCTTTGCAAAATGCAAGCCATTCCGGATGGCCCTCTAGTTTAGTTACTGGTCAGCCAAAAGAGAAATTTAATTCTCGTTTGCCTGTCTCATATGGAATGCCATGGTCTGTTGCTCAGCAATACGGAACTCCTCATGCTGAAATCACAGGGTGTTGGGTCACTGCTCCTGGCATGCCTTTCAACCCATTTCCTCCATTACCCCCATATCCACGGGATATCCAAGACTGTCAACCTTCTAATACTAATGGTATGGAAATTGATCAACCTGCTGAAGTTAAGCAACAGGATGCCAATGGTGTGATTAATTGTTGCTCAGAATCAGATAATACTACCAGCACAGCTGGTGCTAAGCCTGAAGACACGAACCTTGAATGCGAGGATTATAAACACGACACTAAGAGGTTGAAGGGTGACTCCAATGATTTGGGGAAGGATTACTTTAGACAGCAGAAATGGAACAATTCAAAAATACATCGAACGTGGTTCAAGAGGAATGCATGGAAATGTAACGACAACAACTCTAGTGGTGATATGTGCAGTGTAGATGTAGGAGATGTATCAAAAGAATCCAAAGTTACTAGTTATTCGGAGGATGCAATCTGTAGAGATGAGAAAGGTGGAAAATAA 6135 0.4187 MGSCGEPAIVVDPSGLSVMEQPFSSELDSVQELCSEEACNGVVDGSVGEAHVSCSVSFVDVAEGSGDAFKNECENGDMLKKLDKAVEDDCGNSLGICSEDVEVSDLKSGGLCSEGSFQDEGYVDFPLESITSNSLQKLCAEQGEQKDVIEVSDLKSGVLCSEGNFQDEGYVDIPLESITSDNLQKHCAEQGEQKDVIEVSDLKSGGLCSEGNFQDGHYVDLPLESITSNNLQKHCAEQGEKKDVKSIIFPSAGDDSEVVEGKTDGADLLAGAVNCVFDARQSEVCLESDFVTDLLVDYNQENEPEEIMRNADSMPRVVENCDALGGMDTNSCRQISPSLDVEVPSGALYIDTKVESTSDILHDQKNGEDCDSTHEEKIRTDVDAEITINSYVQANSSPDFQRTSPVVDSLCQPTLLDQGSELKNGILQTEDNFCISKDCSADVLANSTIRKPFYPESGQSSFVLITNSSPKDVPDLLSKGDGVSINNNCAVDNPGQTKNDGKEAVEVDCITESILLPSQRSSQRTKFGRKTQTRKSSRKSKNKASVTHPGGGMKINLEAARKRRSCLSKPARSSVWGLLGNIEQFIQHENELEVSEAMGQSEGKARNGHQGRKMIKNGASSSSLSSVQKHNVSTSTTRFRLKIKFGKENDLHCSNVLESVGGLASASYLGSDSGSQKVTNNSADKFSEVSALNNLESFRKDLDKDCVVVNGQIVNSQLENSKITEKSDGDAEEPCHTVPPERVVEELVKPINNSVIEPGTSPDSEVIDSIPEVQVGERHEDVHLAVLGSSNELNSNMDVTFGKRDKKKDNLICSGNCITEDGSQGQLGNNIVKHSKNHRRKKNFKDVVSSLELPTSTELSKSVKSKELAAESLPRSGEVVLGVSTKALKVKSDVNIKTAGKTSGGHGFSEFQASQDLPSSTRPLGRKLPKSFEPIDVSTAKSKASDSTSRKKTTTGRKEKQKEPINKSEVKGKGVSVKVTSEVEDHLHPDVVGNHKLDAVGKIDPSDNSVSVNVSNLDMQPGFGLGEQPQSPRNAWVSCDDCHKWRRIPALLADRIDETNCTWTCKDSSDKAFADCDIPQEKSNAEINAELGLSYASGEEDVCEDSKNYKELEYRLPSVSQESTFTRIFTNEFLHRNPKTQTIDEVMVCHCKPPPEGKLGCGDECLNRMLNIECVQGTCPCGDRCSNQQFQKRSYSRLKWFKCGKKGYGLKALERVAKGHFIIEYVGEVLDMPAYEARQREYALKGHRHFYFMTLNGSEVIDASAKGNLGRFINHSCDPNCRTEKWMVNGEICIGLFALRNIKQDEELTFDYNYVRVFGAAAKKCYCGSPHCRGYIGGGDPLNAELIVHGDSDDEYPEPMMLTKDGEIEDSIPMPFDNVDTESSRHVLTDRDVLDKSTTSIDEDGSPGKDSSVNPASAVSLLHSSVEVEDSKGNLPSDQIEEISQQMEDTTSKPMPAVSKVLSNSTDSRESKSEMGEGGNGVSQSHMHVKKTSKLNASVKKAKVSANAANGPTAEVAANRLPVSSIKHKKVIEGSSNGRFEAVQGKLNELLDGNGGISKRKDATKGYLKLLLLTVASGDRYTGEAIQSNRDLSMILDALLKTKSRAVLNDIISKNGLQMLHKIMKQYRQDFKKIPILRKLLKVLEYLAEGKVLTPEHINSGPPCRGMESFRRSMLSLTEHDDKQVHQIARSFRDRWIRRNGRKRGHMDRDDNRVESQRNFNSNRFSVSHNHRHEQGLRPKEEIDCGQQSMLVTTSTSVDGGSQEGCSTPSLDGVEIIGVKKRKRKSRWDQPAETNSYYGAAVIGSTNESQIMNEELPPGFSCPVRSSNSALNSGSPALQNASHSGWPSSLVTGQPKEKFNSRLPVSYGMPWSVAQQYGTPHAEITGCWVTAPGMPFNPFPPLPPYPRDIQDCQPSNTNGMEIDQPAEVKQQDANGVINCCSESDNTTSTAGAKPEDTNLECEDYKHDTKRLKGDSNDLGKDYFRQQKWNNSKIHRTWFKRNAWKCNDNNSSGDMCSVDVGDVSKESKVTSYSEDAICRDEKGGK 2044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03874 2044 SMART set_7 1196 1319 IPR001214 GO:0005515
Trre6g03874 2044 CDD SET_SETD2 1195 1337 IPR044437 GO:0010452|GO:0046975
Trre6g03874 2044 MobiDBLite consensus disorder prediction 1443 1487 - -
Trre6g03874 2044 ProSiteProfiles AWS domain profile. 1144 1194 IPR006560 GO:0005634|GO:0042054
Trre6g03874 2044 PANTHER SET DOMAIN PROTEINS 537 1794 - -
Trre6g03874 2044 SMART PostSET_3 1321 1337 IPR003616 -
Trre6g03874 2044 MobiDBLite consensus disorder prediction 905 921 - -
Trre6g03874 2044 Gene3D - 1026 1089 - -
Trre6g03874 2044 ProSiteProfiles SET domain profile. 1196 1313 IPR001214 GO:0005515
Trre6g03874 2044 SUPERFAMILY SET domain 1125 1334 IPR046341 -
Trre6g03874 2044 FunFam Histone-lysine N-methyltransferase 1028 1089 - -
Trre6g03874 2044 Gene3D SET domain 1092 1345 IPR046341 -
Trre6g03874 2044 MobiDBLite consensus disorder prediction 945 969 - -
Trre6g03874 2044 MobiDBLite consensus disorder prediction 1825 1853 - -
Trre6g03874 2044 ProSiteProfiles Zinc finger CW-type profile. 1030 1084 IPR011124 GO:0008270
Trre6g03874 2044 SMART shorttest3 1144 1195 IPR006560 GO:0005634|GO:0042054
Trre6g03874 2044 MobiDBLite consensus disorder prediction 1383 1403 - -
Trre6g03874 2044 MobiDBLite consensus disorder prediction 897 976 - -
Trre6g03874 2044 ProSiteProfiles Post-SET domain profile. 1321 1337 IPR003616 -
Trre6g03874 2044 FunFam Histone-lysine N-methyltransferase 1095 1352 - -
Trre6g03874 2044 Pfam CW-type Zinc Finger 1036 1082 IPR011124 GO:0008270
Trre6g03874 2044 Pfam AWS domain 1159 1193 IPR006560 GO:0005634|GO:0042054
Trre6g03874 2044 MobiDBLite consensus disorder prediction 1443 1469 - -
Trre6g03874 2044 MobiDBLite consensus disorder prediction 596 631 - -
Trre6g03874 2044 MobiDBLite consensus disorder prediction 520 557 - -
Trre6g03874 2044 MobiDBLite consensus disorder prediction 1366 1415 - -
Trre6g03874 2044 MobiDBLite consensus disorder prediction 527 542 - -
Trre6g03874 2044 Pfam SET domain 1207 1313 IPR001214 GO:0005515
Trre6g03874 2044 MobiDBLite consensus disorder prediction 614 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03874 Trre-Chr6 40597974 40610540 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03874 1178 1337 Su(var)3-9 homologs AT1G73100 34.536 1.64e-19 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre6g03874 SET 2.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03874 - - mtr:25489708 2933.67