Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03873 ATGGGGTCGTGTGGTGAGCCTGCAATTGTTGTTGATCCATCTGGTTTGTCTGTAATGGAGCAGCCTTTCAGCTCGGAGTTAGATTCTGTGCAGGAGTTGTGCTCAGAGGAAGCTTGCAATGGTGTGGTTGATGGTTCTGTGGGAGAGGCTCATGTGAGTTGTTCTGTAAGCTTTGTTGATGTTGCCGAGGGGTCCGGAGATGCTTTCAAAAATGAGTGTGAAAATGGTGATATGTTAAAAAAATTGGACAAAGCTGTTGAAGATGATTGTGGGAATAGTTTGGGGATTTGTTCCGAAGACGTTGAAGTCTCTGACCTTAAAAGTGGTGGATTGTGCTCAGAAGGAAGTTTTCAAGATGAAGGCTACGTTGACTTTCCGTTGGAGTCAATAACCTCAAATAGTTTGCAGAAGCTTTGTGCTGAACAGGGTGAGCAGAAGGATGTCATTGAAGTTTCTGATCTTAAAAGTGGTGTATTGTGCTCAGAAGGAAATTTTCAAGATGAAGGCTACGTTGACATTCCGTTGGAGTCAATAACTTCGGATAATTTGCAGAAGCATTGTGCTGAACAGGGTGAGCAGAAGGATGTCATTGAAGTATCCGATCTTAAAAGTGGTGGATTGTGCTCAGAAGGAAATTTTCAAGATGGACACTACGTTGACCTTCCGTTGGAGTCAATAACCTCAAATAATTTGCAGAAGCATTGTGCTGAACAGGGTGAGAAGAAGGATGTCAAGAGCATAATTTTTCCCTCGGCAGGAGATGATTCGGAAGTTGTGGAAGGAAAAACCGATGGTGCTGATTTGCTAGCAGGTGCTGTCAACTGTGTGTTTGATGCCAGACAGTCTGAAGTGTGTTTGGAATCTGATTTCGTGACCGATTTGCTAGTTGATTACAACCAGGAAAATGAGCCAGAGGAGATCATGAGAAATGCAGATAGCATGCCAAGGGTTGTAGAAAATTGTGATGCTTTAGGTGGGATGGACACCAATTCTTGCAGGCAGATATCTCCTTCACTGGATGTGGAAGTGCCGTCAGGTGCCTTATATATAGATACAAAAGTAGAGAGCACAAGTGATATTCTACATGATCAGAAAAATGGCGAGGATTGTGACAGTACTCATGAAGAAAAGATAAGAACCGATGTTGATGCAGAAATCACTATTAATTCATATGTACAAGCAAATTCATCACCAGATTTCCAAAGGACTTCACCTGTAGTTGATTCACTATGTCAGCCCACCTTGCTGGATCAAGGGAGCGAATTAAAAAATGGCATATTGCAAACAGAAGATAATTTTTGTATATCAAAGGATTGTTCTGCAGATGTACTTGCCAACTCTACCATTAGAAAGCCATTTTATCCAGAATCGGGCCAGTCCTCTTTTGTATTAATCACCAACAGCTCTCCAAAGGATGTTCCGGATCTCCTTTCCAAGGGCGATGGTGTTTCCATCAACAATAATTGTGCTGTAGACAATCCTGGACAGACAAAAAATGATGGAAAAGAAGCTGTTGAAGTTGATTGTATCACTGAAAGCATACTGTTACCTTCTCAGAGGAGCAGCCAGAGAACCAAATTTGGTCGCAAGACACAAACCAGAAAGTCTTCTAGAAAATCCAAGAACAAAGCCAGTGTGACACATCCAGGTGGGGGTATGAAGATTAACTTAGAGGCTGCTAGAAAAAGAAGAAGCTGTTTATCCAAACCAGCTCGTTCTTCTGTCTGGGGATTGCTTGGCAATATTGAACAGTTTATTCAGCATGAAAATGAGCTTGAAGTTAGTGAAGCAATGGGCCAGAGTGAGGGTAAGGCTAGAAACGGGCATCAAGGTAGGAAAATGATTAAGAATGGTGCAAGTTCTAGCTCATTAAGTTCAGTTCAAAAGCATAATGTTTCAACTTCAACTACTCGTTTTCGTCTGAAGATTAAGTTTGGAAAAGAAAATGATTTACATTGCTCAAATGTTCTGGAGTCTGTTGGTGGCTTGGCTTCTGCTTCCTATTTGGGGTCTGATTCAGGTTCTCAGAAAGTAACCAACAATTCTGCAGATAAATTTTCCGAAGTGTCGGCTTTAAACAATTTAGAATCATTCAGAAAGGACCTGGACAAGGACTGTGTTGTTGTAAATGGACAAATTGTAAATAGCCAGTTAGAAAATTCTAAAATAACGGAGAAGTCAGATGGGGATGCAGAGGAACCATGTCACACAGTTCCTCCAGAGAGAGTGGTTGAAGAATTAGTTAAGCCAATTAATAATTCTGTTATAGAACCAGGAACATCACCTGATTCAGAAGTCATTGATTCAATTCCCGAAGTCCAGGTTGGAGAGAGACATGAAGATGTACATCTTGCTGTGTTAGGTTCTTCTAATGAGTTAAATTCTAATATGGATGTTACCTTTGGGAAGAGAGATAAGAAGAAAGACAATCTTATTTGTTCAGGCAATTGTATCACTGAAGATGGATCACAAGGTCAACTAGGGAATAATATAGTTAAGCATTCAAAGAATCACAGACGTAAGAAGAACTTCAAGGATGTGGTTAGCTCTTTAGAATTACCTACTTCCACTGAGCTAAGCAAATCTGTAAAGAGTAAAGAATTGGCTGCAGAATCATTGCCCCGTTCTGGAGAGGTTGTACTTGGAGTCTCTACCAAGGCTTTGAAAGTTAAAAGTGATGTGAATATCAAGACAGCTGGTAAAACATCTGGTGGCCATGGATTTTCTGAATTCCAGGCATCCCAGGATTTGCCGTCTTCTACAAGACCTTTGGGTCGTAAATTACCTAAAAGTTTTGAACCTATTGATGTTAGCACGGCCAAATCAAAAGCTTCTGATTCGACAAGCAGGAAAAAGACTACTACTGGACGCAAAGAGAAACAGAAAGAGCCAATTAACAAAAGTGAAGTCAAGGGAAAAGGTGTCTCTGTCAAAGTTACATCTGAAGTAGAAGATCACCTGCATCCAGCAGATGTAGTTGGAAATCATAAGTTGGATGCTGTTGGAAAAATTGATCCAAGTGACAACAGTGTATCTGTCAATGTATCTAATTTAGACATGCAGCCTGGTTTTGGTTTGGGAGAACAACCTCAGTCACCGCGTAATGCATGGGTGAGTTGTGATGATTGTCACAAGTGGCGGCGTATTCCAGCTTTGCTTGCTGACCGGATTGATGAAACTAACTGCACCTGGACATGCAAGGACAGCAGTGATAAAGCCTTTGCTGATTGTGATATCCCTCAAGAAAAATCAAATGCAGAGATTAATGCAGAGTTAGGACTATCATATGCCTCTGGTGAAGAAGATGTATGCGAAGACTCCAAAAACTATAAGGAATTAGAATATCGACTACCATCGGTTTCCCAAGAGTCAACTTTTACCCGCATCTTCACCAATGAGTTTCTGCACCGCAACCCAAAAACTCAGACTATTGACGAGGTAATGGTTTGCCATTGCAAGCCACCTCCAGAAGGCAAGTTGGGATGTGGGGATGAATGTCTAAATCGGATGCTTAACATTGAATGTGTGCAAGGAACTTGCCCATGTGGGGATCGTTGCTCCAATCAGCAGTTCCAAAAACGCAGCTATTCCAGATTGAAGTGGTTTAAATGTGGGAAAAAAGGTTATGGGCTGAAGGCACTTGAGCGTGTAGCCAAAGGCCATTTCATTATTGAATATGTTGGAGAGGTCCTTGATATGCCTGCATATGAGGCACGTCAAAGAGAGTATGCTTTGAAGGGTCATAGACATTTCTATTTTATGACCTTGAACGGCAGTGAGGTGATTGATGCAAGCGCAAAAGGAAACTTGGGGCGTTTCATTAATCATAGTTGTGATCCCAATTGTCGGACAGAAAAGTGGATGGTGAATGGGGAGATCTGTATTGGACTGTTTGCATTGCGGAATATCAAGCAGGATGAAGAATTGACGTTTGATTACAACTATGTAAGGGTTTTTGGAGCTGCTGCCAAAAAATGCTATTGTGGTTCACCTCATTGTCGAGGTTATATAGGTGGTGGTGATCCACTTAATGCTGAGCTTATAGTTCATGGTGATTCTGATGATGAATATCCAGAACCCATGATGCTTACCAAAGATGGTGAAATTGAGGACAGCATACCTATGCCCTTTGATAATGTTGATACGGAGTCTTCTAGGCATGTATTAACGGACAGGGATGTATTGGACAAGTCTACAACTTCTATAGATGAAGATGGTTCTCCAGGGAAAGATAGTTCTGTGAACCCTGCCTCTGCTGTTTCCCTGTTGCACAGTTCAGTTGAAGTGGAAGACTCAAAAGGCAATTTACCATCTGATCAAATAGAAGAAATTTCTCAACAAATGGAGGATACAACAAGCAAGCCCATGCCTGCTGTCAGCAAAGTGTTGTCGAATTCTACTGATAGTAGAGAATCCAAGTCTGAAATGGGTGAAGGCGGGAATGGTGTTTCCCAATCACATATGCATGTCAAGAAGACTTCTAAACTAAATGCTTCTGTTAAAAAGGCTAAAGTCAGTGCTAATGCTGCAAATGGCCCTACAGCTGAGGTCGCAGCCAATCGATTGCCAGTGTCATCGATCAAACACAAAAAAGTAATCGAAGGTTCTTCCAATGGACGGTTTGAAGCAGTTCAGGGGAAACTTAATGAGTTGCTGGATGGAAATGGGGGAATAAGCAAAAGAAAAGACGCCACTAAAGGCTACTTGAAACTTTTGCTTCTCACCGTGGCTTCAGGTGATAGATACACTGGTGAAGCAATTCAAAGCAATCGAGATCTTTCCATGATCCTTGATGCTCTTCTGAAAACAAAATCTAGAGCCGTGCTGAATGATATAATTAGTAAAAATGGTTTACAGATGTTGCATAAGATCATGAAGCAGTACAGGCAAGACTTCAAAAAAATTCCAATACTGCGAAAGCTTCTTAAGGTCTTGGAGTACCTGGCAGAAGGCAAGGTTTTGACACCCGAACATATCAACAGTGGTCCTCCCTGTCGAGGAATGGAGAGTTTTAGGCGTTCAATGTTGTCTCTGACAGAGCATGATGACAAACAGGTCCATCAAATTGCTCGAAGCTTCCGAGACAGATGGATTCGCAGAAATGGCAGAAAACGTGGTCATATGGACAGGGATGATAATAGGGTGGAATCTCAGAGAAATTTCAACTCTAACAGATTTTCAGTATCACACAATCATAGGCACGAGCAGGGATTAAGACCTAAAGAAGAAATTGATTGCGGTCAGCAGTCTATGCTCGTGACAACTTCAACTTCAGTAGATGGTGGCTCCCAGGAGGGCTGCTCTACACCGTCTTTGGATGGAGTTGAGATTATCGGGGTAAAAAAGCGTAAGCGCAAAAGCCGATGGGATCAACCAGCAGAAACAAATTCATATTATGGTGCTGCTGTTATTGGCTCTACCAATGAAAGCCAGATCATGAATGAAGAACTTCCACCAGGGTTTTCATGTCCAGTACGTTCTTCAAACAGTGCACTAAACTCGGGCAGTCCTGCTTTGCAAAATGCAAGCCATTCCGGATGGCCCTCTAGTTTAGTTACTGGTCAGCCAAAAGAGAAATTTAATTCTCGTTTGCCTGTCTCATATGGAATGCCATGGTCTGTTGCTCAGCAATACGGAACTCCTCATGCTGAAATCACAGGGTGTTGGGTCACTGCTCCTGGCATGCCTTTCAACCCATTTCCTCCATTACCCCCATATCCACGGGATATCCAAGACTGTCAACCTTCTAATACTAATGGTATGGAAATTGATCAACCTGCTGAAGTTAAGCAACAGGATGCCAATGGTGTGATTAATTGTTGCTCAGAATCAGATAATACTACCAGCACAGCTGGTGCTAAGCCTGAAGACACGAACCTTGAATGCGAGGATTATAAACACGACACTAAGAGGTTGAAGGGTGACTCCAATGATTTGGGGAAGGATTACTTTAGACAGCAGAAATGGAACAATTCAAAAATACATCGAACGTGGTTCAAGAGGAATGCATGGAAATGTAACGACAACAACTCTAGTGGTGATATGTGCAGTGTAGATGTAGGAGATGTATCAAAAGAATCCAAAGTTACTAGTTATTCGGAGGATGCAATCTGTAGAGATGAGAAAGGTGGAAAATAA 6138 0.4189 MGSCGEPAIVVDPSGLSVMEQPFSSELDSVQELCSEEACNGVVDGSVGEAHVSCSVSFVDVAEGSGDAFKNECENGDMLKKLDKAVEDDCGNSLGICSEDVEVSDLKSGGLCSEGSFQDEGYVDFPLESITSNSLQKLCAEQGEQKDVIEVSDLKSGVLCSEGNFQDEGYVDIPLESITSDNLQKHCAEQGEQKDVIEVSDLKSGGLCSEGNFQDGHYVDLPLESITSNNLQKHCAEQGEKKDVKSIIFPSAGDDSEVVEGKTDGADLLAGAVNCVFDARQSEVCLESDFVTDLLVDYNQENEPEEIMRNADSMPRVVENCDALGGMDTNSCRQISPSLDVEVPSGALYIDTKVESTSDILHDQKNGEDCDSTHEEKIRTDVDAEITINSYVQANSSPDFQRTSPVVDSLCQPTLLDQGSELKNGILQTEDNFCISKDCSADVLANSTIRKPFYPESGQSSFVLITNSSPKDVPDLLSKGDGVSINNNCAVDNPGQTKNDGKEAVEVDCITESILLPSQRSSQRTKFGRKTQTRKSSRKSKNKASVTHPGGGMKINLEAARKRRSCLSKPARSSVWGLLGNIEQFIQHENELEVSEAMGQSEGKARNGHQGRKMIKNGASSSSLSSVQKHNVSTSTTRFRLKIKFGKENDLHCSNVLESVGGLASASYLGSDSGSQKVTNNSADKFSEVSALNNLESFRKDLDKDCVVVNGQIVNSQLENSKITEKSDGDAEEPCHTVPPERVVEELVKPINNSVIEPGTSPDSEVIDSIPEVQVGERHEDVHLAVLGSSNELNSNMDVTFGKRDKKKDNLICSGNCITEDGSQGQLGNNIVKHSKNHRRKKNFKDVVSSLELPTSTELSKSVKSKELAAESLPRSGEVVLGVSTKALKVKSDVNIKTAGKTSGGHGFSEFQASQDLPSSTRPLGRKLPKSFEPIDVSTAKSKASDSTSRKKTTTGRKEKQKEPINKSEVKGKGVSVKVTSEVEDHLHPADVVGNHKLDAVGKIDPSDNSVSVNVSNLDMQPGFGLGEQPQSPRNAWVSCDDCHKWRRIPALLADRIDETNCTWTCKDSSDKAFADCDIPQEKSNAEINAELGLSYASGEEDVCEDSKNYKELEYRLPSVSQESTFTRIFTNEFLHRNPKTQTIDEVMVCHCKPPPEGKLGCGDECLNRMLNIECVQGTCPCGDRCSNQQFQKRSYSRLKWFKCGKKGYGLKALERVAKGHFIIEYVGEVLDMPAYEARQREYALKGHRHFYFMTLNGSEVIDASAKGNLGRFINHSCDPNCRTEKWMVNGEICIGLFALRNIKQDEELTFDYNYVRVFGAAAKKCYCGSPHCRGYIGGGDPLNAELIVHGDSDDEYPEPMMLTKDGEIEDSIPMPFDNVDTESSRHVLTDRDVLDKSTTSIDEDGSPGKDSSVNPASAVSLLHSSVEVEDSKGNLPSDQIEEISQQMEDTTSKPMPAVSKVLSNSTDSRESKSEMGEGGNGVSQSHMHVKKTSKLNASVKKAKVSANAANGPTAEVAANRLPVSSIKHKKVIEGSSNGRFEAVQGKLNELLDGNGGISKRKDATKGYLKLLLLTVASGDRYTGEAIQSNRDLSMILDALLKTKSRAVLNDIISKNGLQMLHKIMKQYRQDFKKIPILRKLLKVLEYLAEGKVLTPEHINSGPPCRGMESFRRSMLSLTEHDDKQVHQIARSFRDRWIRRNGRKRGHMDRDDNRVESQRNFNSNRFSVSHNHRHEQGLRPKEEIDCGQQSMLVTTSTSVDGGSQEGCSTPSLDGVEIIGVKKRKRKSRWDQPAETNSYYGAAVIGSTNESQIMNEELPPGFSCPVRSSNSALNSGSPALQNASHSGWPSSLVTGQPKEKFNSRLPVSYGMPWSVAQQYGTPHAEITGCWVTAPGMPFNPFPPLPPYPRDIQDCQPSNTNGMEIDQPAEVKQQDANGVINCCSESDNTTSTAGAKPEDTNLECEDYKHDTKRLKGDSNDLGKDYFRQQKWNNSKIHRTWFKRNAWKCNDNNSSGDMCSVDVGDVSKESKVTSYSEDAICRDEKGGK 2045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03873 2045 ProSiteProfiles Zinc finger CW-type profile. 1031 1085 IPR011124 GO:0008270
Trre6g03873 2045 MobiDBLite consensus disorder prediction 905 921 - -
Trre6g03873 2045 SMART shorttest3 1145 1196 IPR006560 GO:0005634|GO:0042054
Trre6g03873 2045 SUPERFAMILY SET domain 1126 1335 IPR046341 -
Trre6g03873 2045 ProSiteProfiles AWS domain profile. 1145 1195 IPR006560 GO:0005634|GO:0042054
Trre6g03873 2045 MobiDBLite consensus disorder prediction 945 969 - -
Trre6g03873 2045 MobiDBLite consensus disorder prediction 1367 1416 - -
Trre6g03873 2045 Gene3D SET domain 1093 1346 IPR046341 -
Trre6g03873 2045 SMART set_7 1197 1320 IPR001214 GO:0005515
Trre6g03873 2045 MobiDBLite consensus disorder prediction 897 976 - -
Trre6g03873 2045 MobiDBLite consensus disorder prediction 1444 1470 - -
Trre6g03873 2045 FunFam Histone-lysine N-methyltransferase 1029 1090 - -
Trre6g03873 2045 Pfam SET domain 1208 1314 IPR001214 GO:0005515
Trre6g03873 2045 CDD SET_SETD2 1196 1338 IPR044437 GO:0010452|GO:0046975
Trre6g03873 2045 MobiDBLite consensus disorder prediction 1826 1854 - -
Trre6g03873 2045 SMART PostSET_3 1322 1338 IPR003616 -
Trre6g03873 2045 FunFam Histone-lysine N-methyltransferase 1096 1353 - -
Trre6g03873 2045 ProSiteProfiles SET domain profile. 1197 1314 IPR001214 GO:0005515
Trre6g03873 2045 ProSiteProfiles Post-SET domain profile. 1322 1338 IPR003616 -
Trre6g03873 2045 Gene3D - 1027 1090 - -
Trre6g03873 2045 Pfam AWS domain 1160 1194 IPR006560 GO:0005634|GO:0042054
Trre6g03873 2045 MobiDBLite consensus disorder prediction 1444 1488 - -
Trre6g03873 2045 MobiDBLite consensus disorder prediction 1384 1404 - -
Trre6g03873 2045 MobiDBLite consensus disorder prediction 596 631 - -
Trre6g03873 2045 MobiDBLite consensus disorder prediction 520 557 - -
Trre6g03873 2045 PANTHER SET DOMAIN PROTEINS 537 1795 - -
Trre6g03873 2045 MobiDBLite consensus disorder prediction 527 542 - -
Trre6g03873 2045 MobiDBLite consensus disorder prediction 614 631 - -
Trre6g03873 2045 Pfam CW-type Zinc Finger 1037 1083 IPR011124 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03873 Trre-Chr6 40597974 40610540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03873 1179 1338 Su(var)3-9 homologs AT1G73100 34.536 1.69e-19 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre6g03873 SET 2.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03873 - - mtr:25489708 2939.83