Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03858 ATGAAAGCCAAAGGTGGTTCAGCTGTTAATGAAATTGAGAATGGAAATACTGACAAGAAGGAACATCGCCAAGCAGTTGTTCATTTGTTGATTTCAGAATCTGTGGCTAAAGGACATGTAATGCTAGCTAAGTCTCTTCGCCTTTATTTGAGAGCTAGCCTGCATTCATGGGTTTATTTGAAGGCATGTGATATTATTTTGGAAAAAACTATCCCTTCCATTTCTCTTTGTCCTTGTCGATTCAAACTGGCAAGGCAGGATAATTCTGTTGAGAAAGATGGTCTAGATGATTTTCACAGCCACAGGAATCACATTGATGAAAAATTGCATGGGAAAGCCACTTCAGGTGTCTTTTTGGATACCATAAATTGGTCAATGCACAGTGAAGTTGTTGCAGCTCTTTCTGATGAATCCAGTTACAGAGAAGAGGAAGAGGTTGCAAACCAATCTCAAAATCAAAAGGGATTACAAAGTCTTGTACGACTATGGTATATTGCACAGCTTGAGGCAATTACTTCCATTATGGGGATGGAATTTAATTCATTGGTTCTCGGTAGTAAAACCTTGCTCCATTTTGAATTAAGCTGTTACAAGATTGGGAGTGATGGGAAGCTTCAGCTGACTTCTTCCGGAAACAGTGGCAAGGCAGCTGAAATGTTATTTTTATTGACCTTTGGTGAAGAAGATCTGCATAATGGAAAACTTAATGCATATGAAGTTTCACTTGGTGGCAGACTCAATAACATCAACGTTGAGGATCTAAAGTTTTTTGAAAGAATGAAATTGGGTGATCCCATTTCTATTCCTTCTTTGGACGAGAGAGCCTCTGCAGACCACATTCATTCAAATGTACCTTTCCATGGCTGGATGGAGAAAACTGCTTCTGATGTTATCAATAGGATGTTGGTATTGTTATCTTCAGCATGTGGTTTGTGGTTTGGCTCATGCAACCTACCACTTCCTGGACATGTTGTAATATATGGACCTCCAGGTTCTGGGAAAACTATACTAGCAACGAATGTGGCAATATCCCTTGAGAAGCATGAAGACATCTTAGCGCACATAATTTATGTTTCCTGCTCAAAACTTGCTTTGGAGAAGGTCCCAGTTATTCGTCAAGAACTTGTAAACCATATAACTGAAGCTATAAACCACGCACCTTCTGTTGTCATCTTTGATAATCTTGATAGTATAATTTCTACCCCTGATTCCGAAGGTTCTCAGCCATCAATGTCTGTTGCTGGACTCACAAATTTTCTAGTTGACATCATGGATGAATATGGGGAGAAGAGGCGAAATTCATGTGGATTTGGTCCAATAGCTTTCATAGCTACCATACAGTCCCTAGAGAGTATACCACAATCTTTGAGCTCTTCAGGACGGTTTGACTTTCACATTAAGTTGCCTGCTCCTGCAGCTTCTGAGCGCAAAGCTATGTTGAAGCATGTAATACAAAGGCGACACTTGCAATGCAATGATGACATCCTGCTTGATGTGGCTGTAAAATGTGATGGTTATGATGGCTATGATCTGGAAATTTTAGTTGACAGAACTGTCCATGCTGCTGTTCGCCGTTTTCTGCCATCTAATGCCATTTATGAGCATGAGGGTCCTGCTTTACTACGAGAGGATTTCTCTCAGGCAATGCATGATTTTCTCCCAGTTGCAATGCGTGACATCACAAAATCTGTTTCTGATGATGGCCGTTCTGGATGGGATGATGTCGGCGGTCTTGTTGATATTCGAAATGCTATTAAAGAGATGATCGAGTTGCCATCAAAATTTCCAAAAACTTTTGCGCAAGCACCGTTAAGGTTGCGGTCAAATATCCTTTTATATGGTCCTCCTGGTTGTGGCAAAACTCACATAGTCGGTGTTGCTGCCGCTGCTTCTTCGCTTCGATTCATATCAGTGAAAGGGCCAGAACTGTTAAACAAATACATCGGTGCTTCTGAACAAGCTGTTAGGGATATATTTTCTAAAGCAGCAGCTGCAGCACCGTGCCTACTTTTTTTTGATGAATTTGATTCTATTGCTCCTAAGAGAGGGCACGACAATACTGGAGTAACTGACCGTGTTGTCAATCAATTTTTGACTGAGTTAGACGGAGTTGAGATTTTAGCTGGTGTATTTGTGTTTGCTGCAACCAGTAGACCGGATCTACTGGATGCAGCATTGTTGAGACCGGGTAGGTTAGATCGTCTTCTATTTTGCAACTTTCCATCTTGGCATGAGAGATTGGAAATTCTTACGGTACTTTCTAGAAAGTTACCAATGGGCAATGATATTGATTTGGCAGCAGTAGCTAATATGACTGAGGGATTCAGTGGAGCTGATCTCCAAGCTCTCCTCTCAGATGCACAACTTACAGCAGTTCATGATATTCTGGACAATATCGATACGTCTGGGTCAGAGAAAACACCAGTTATTACTGATGCTCTTCTAAAGCTCACTGCATCCAAGACCAGACCATCTGTTTCTGAGGAAGAGAAAAGACGACTCTACAGTATTTATCACCAGTTTCTGGATTCAAAGAGATCTGTTGCTGCCCAGTCAAGGGATGCAAAAGGCAAGAGGGCAACTCTAGCGTGA 2592 0.4136 MKAKGGSAVNEIENGNTDKKEHRQAVVHLLISESVAKGHVMLAKSLRLYLRASLHSWVYLKACDIILEKTIPSISLCPCRFKLARQDNSVEKDGLDDFHSHRNHIDEKLHGKATSGVFLDTINWSMHSEVVAALSDESSYREEEEVANQSQNQKGLQSLVRLWYIAQLEAITSIMGMEFNSLVLGSKTLLHFELSCYKIGSDGKLQLTSSGNSGKAAEMLFLLTFGEEDLHNGKLNAYEVSLGGRLNNINVEDLKFFERMKLGDPISIPSLDERASADHIHSNVPFHGWMEKTASDVINRMLVLLSSACGLWFGSCNLPLPGHVVIYGPPGSGKTILATNVAISLEKHEDILAHIIYVSCSKLALEKVPVIRQELVNHITEAINHAPSVVIFDNLDSIISTPDSEGSQPSMSVAGLTNFLVDIMDEYGEKRRNSCGFGPIAFIATIQSLESIPQSLSSSGRFDFHIKLPAPAASERKAMLKHVIQRRHLQCNDDILLDVAVKCDGYDGYDLEILVDRTVHAAVRRFLPSNAIYEHEGPALLREDFSQAMHDFLPVAMRDITKSVSDDGRSGWDDVGGLVDIRNAIKEMIELPSKFPKTFAQAPLRLRSNILLYGPPGCGKTHIVGVAAAASSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEILAGVFVFAATSRPDLLDAALLRPGRLDRLLFCNFPSWHERLEILTVLSRKLPMGNDIDLAAVANMTEGFSGADLQALLSDAQLTAVHDILDNIDTSGSEKTPVITDALLKLTASKTRPSVSEEEKRRLYSIYHQFLDSKRSVAAQSRDAKGKRATLA 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03858 863 FunFam Nuclear valosin-containing protein-like 568 746 - -
Trre6g03858 863 Pfam AAA+ lid domain 762 801 IPR041569 -
Trre6g03858 863 Pfam ATPase family associated with various cellular activities (AAA) 324 469 IPR003959 GO:0005524|GO:0016887
Trre6g03858 863 Pfam ATPase family associated with various cellular activities (AAA) 610 737 IPR003959 GO:0005524|GO:0016887
Trre6g03858 863 FunFam Peroxisome biogenesis protein 1 277 471 - -
Trre6g03858 863 CDD RecA-like_PEX1_r2 581 738 - -
Trre6g03858 863 Gene3D - 472 565 - -
Trre6g03858 863 Gene3D - 288 471 IPR027417 -
Trre6g03858 863 Gene3D - 741 820 - -
Trre6g03858 863 ProSitePatterns AAA-protein family signature. 710 728 IPR003960 GO:0005524|GO:0016887
Trre6g03858 863 PANTHER AAA-FAMILY ATPASE 154 837 - -
Trre6g03858 863 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 572 833 IPR027417 -
Trre6g03858 863 Gene3D - 571 833 IPR027417 -
Trre6g03858 863 SMART AAA_5 320 472 IPR003593 GO:0016887
Trre6g03858 863 SMART AAA_5 606 742 IPR003593 GO:0016887
Trre6g03858 863 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 305 550 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03858 Trre-Chr6 40262226 40272398 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03858 604 809 Calmodulin-binding Proteins AT3G56690 38.095 3.62e-37 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03858 K13338 - gmx:100803882 1431.39