Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03857 ATGGAGTTCTCGGTTGAGGCGGTGGGAAGCATAGACAACTGTTTCGTATCCCTTCCCTTACCTCTAATCCAAACTCTTCAATCCACAGCTTCATCTACTCTTCCTCCAATTCTCGCTCTTCACCTTCGTTCTCCCACTCATCCTCCTCACTCCTGGTTCGTTGCTTGGTCCGGTGCCACTTCTTCTTCCTCTTCAACCATACAAGTTTCTCAACAATTTGCCGAATGCGTTTCTTTACCAATTCATTCTCCGGTTCAAGTTAAAGTTGCTTCAAACGTTCCTCATGCTTCTTCTGTCTCTATAGAGCCACATACTGAAGATGATTGGGAAATTTTGGAACTTAATTCTCAACAAGCTGAGGATCAAATTCTCAATCAGGTTAGGATTGTTCATGAAGGGATGAGGTTTCCTTTACGGTTGAATCGTCACACTGTCATCACATTCCATGTTGCTTCTGTTTTCCCCAACAATGCGGTGGTACAACTCATGCCAGGAACTGAAGTTGAGGTTGCTCCAAAGACGCGCAAAAGGAATTCGGATTCAGCTGGAGATTCACATGTAGGTTCTAATATTAGAGAGCATACTGCAAAGGTGCTGCTTCGTTTACAAGAGCCAAATGATTTATGTCGTACCAGTACTCATATCAAAGGTGTTGAGCTTCATGTAGGCCTTACTTCGGTTGCTGTTGTTCATCCAGAAACAGCCAAGCACTTCTCATTTAACACTCTTCAGTTGGTTTCCATAGTGCCAAGAGTATCAAAGGAGAACGTTAATAATTCCAGAGCCAAATCCAATATTATGAAAGCCAAAGGTGGTTCAGCTGTTAATGAAATTGAGAATGGAAATACTGACAAGAAGGAACATCGCCAAGCAGTTGTTCATTTGTTGATTTCAGAATCTGTGGCTAAAGGACATGTAATGCTAGCTAAGTCTCTTCGCCTTTATTTGAGAGCTAGCCTGCATTCATGGGTTTATTTGAAGGCATGTGATATTATTTTGGAAAAAACTATCCCTTCCATTTCTCTTTGTCCTTGTCGATTCAAACTGGCAAGGCAGGATAATTCTGTTGAGAAAGATGGTCTAGATGATTTTCACAGCCACAGGAATCACATTGATGAAAAATTGCATGGGAAAGCCACTTCAGGTGTCTTTTTGGATACCATAAATTGGTCAATGCACAGTGAAGTTGTTGCAGCTCTTTCTGATGAATCCAGTTACAGAGAAGAGGAAGAGGTTGCAAACCAATCTCAAAATCAAAAGGGATTACAAAGTCTTGTACGACTATGGTATATTGCACAGCTTGAGGCAATTACTTCCATTATGGGGATGGAATTTAATTCATTGGTTCTCGGTAGTAAAACCTTGCTCCATTTTGAATTAAGCTGTTACAAGATTGGGAGTGATGGGAAGCTTCAGCTGACTTCTTCCGGAAACAGTGGCAAGGCAGCTGAAATGTTATTTTTATTGACCTTTGGTGAAGAAGATCTGCATAATGGAAAACTTAATGCATATGAAGTTTCACTTGGTGGCAGACTCAATAACATCAACGTTGAGGATCTAAAGTTTTTTGAAAGAATGAAATTGGGTGATCCCATTTCTATTCCTTCTTTGGACGAGAGAGCCTCTGCAGACCACATTCATTCAAATGTACCTTTCCATGGCTGGATGGAGAAAACTGCTTCTGATGTTATCAATAGGATGTTGGTATTGTTATCTTCAGCATGTGGTTTGTGGTTTGGCTCATGCAACCTACCACTTCCTGGACATGTTGTAATATATGGACCTCCAGGTTCTGGGAAAACTATACTAGCAACGAATGTGGCAATATCCCTTGAGAAGCATGAAGACATCTTAGCGCACATAATTTATGTTTCCTGCTCAAAACTTGCTTTGGAGAAGGTCCCAGTTATTCGTCAAGAACTTGTAAACCATATAACTGAAGCTATAAACCACGCACCTTCTGTTGTCATCTTTGATAATCTTGATAGTATAATTTCTACCCCTGATTCCGAAGGTTCTCAGCCATCAATGTCTGTTGCTGGACTCACAAATTTTCTAGTTGACATCATGGATGAATATGGGGAGAAGAGGCGAAATTCATGTGGATTTGGTCCAATAGCTTTCATAGCTACCATACAGTCCCTAGAGAGTATACCACAATCTTTGAGCTCTTCAGGACGGTTTGACTTTCACATTAAGTTGCCTGCTCCTGCAGCTTCTGAGCGCAAAGCTATGTTGAAGCATGTAATACAAAGGCGACACTTGCAATGCAATGATGACATCCTGCTTGATGTGGCTGTAAAATGTGATGGTTATGATGGCTATGATCTGGAAATTTTAGTTGACAGAACTGTCCATGCTGCTGTTCGCCGTTTTCTGCCATCTAATGCCATTTATGAGCATGAGGGTCCTGCTTTACTACGAGAGGATTTCTCTCAGGCAATGCATGATTTTCTCCCAGTTGCAATGCGTGACATCACAAAATCTGTTTCTGATGATGGCCGTTCTGGATGGGATGATGTCGGCGGTCTTGTTGATATTCGAAATGCTATTAAAGAGATGATCGAGTTGCCATCAAAATTTCCAAAAACTTTTGCGCAAGCACCGTTAAGGTTGCGGTCAAATATCCTTTTATATGGTCCTCCTGGTTGTGGCAAAACTCACATAGTCGGTGTTGCTGCCGCTGCTTCTTCGCTTCGATTCATATCAGTGAAAGGGCCAGAACTGTTAAACAAATACATCGGTGCTTCTGAACAAGCTGTTAGGGATATATTTTCTAAAGCAGCAGCTGCAGCACCGTGCCTACTTTTTTTTGATGAATTTGATTCTATTGCTCCTAAGAGAGGGCACGACAATACTGGAGTAACTGACCGTGTTGTCAATCAATTTTTGACTGAGTTAGACGGAGTTGAGATTTTAGCTGGTGTATTTGTGTTTGCTGCAACCAGTAGACCGGATCTACTGGATGCAGCATTGTTGAGACCGGGTAGGTTAGATCGTCTTCTATTTTGCAACTTTCCATCTTGGCATGAGAGATTGGAAATTCTTACGGTACTTTCTAGAAAGTTACCAATGGGCAATGATATTGATTTGGCAGCAGTAGCTAATATGACTGAGGGATTCAGTGGAGCTGATCTCCAAGCTCTCCTCTCAGATGCACAACTTACAGCAGTTCATGATATTCTGGACAATATCGATACGTCTGGGTCAGAGAAAACACCAGTTATTACTGATGCTCTTCTAAAGCTCACTGCATCCAAGACCAGACCATCTGTTTCTGAGGAAGAGAAAAGACGACTCTACAGTATTTATCACCAGTTTCTGGATTCAAAGAGATCTGTTGCTGCCCAGTCAAGGGATGCAAAAGGCAAGAGGGCAACTCTAGCGTGA 3390 0.4177 MEFSVEAVGSIDNCFVSLPLPLIQTLQSTASSTLPPILALHLRSPTHPPHSWFVAWSGATSSSSSTIQVSQQFAECVSLPIHSPVQVKVASNVPHASSVSIEPHTEDDWEILELNSQQAEDQILNQVRIVHEGMRFPLRLNRHTVITFHVASVFPNNAVVQLMPGTEVEVAPKTRKRNSDSAGDSHVGSNIREHTAKVLLRLQEPNDLCRTSTHIKGVELHVGLTSVAVVHPETAKHFSFNTLQLVSIVPRVSKENVNNSRAKSNIMKAKGGSAVNEIENGNTDKKEHRQAVVHLLISESVAKGHVMLAKSLRLYLRASLHSWVYLKACDIILEKTIPSISLCPCRFKLARQDNSVEKDGLDDFHSHRNHIDEKLHGKATSGVFLDTINWSMHSEVVAALSDESSYREEEEVANQSQNQKGLQSLVRLWYIAQLEAITSIMGMEFNSLVLGSKTLLHFELSCYKIGSDGKLQLTSSGNSGKAAEMLFLLTFGEEDLHNGKLNAYEVSLGGRLNNINVEDLKFFERMKLGDPISIPSLDERASADHIHSNVPFHGWMEKTASDVINRMLVLLSSACGLWFGSCNLPLPGHVVIYGPPGSGKTILATNVAISLEKHEDILAHIIYVSCSKLALEKVPVIRQELVNHITEAINHAPSVVIFDNLDSIISTPDSEGSQPSMSVAGLTNFLVDIMDEYGEKRRNSCGFGPIAFIATIQSLESIPQSLSSSGRFDFHIKLPAPAASERKAMLKHVIQRRHLQCNDDILLDVAVKCDGYDGYDLEILVDRTVHAAVRRFLPSNAIYEHEGPALLREDFSQAMHDFLPVAMRDITKSVSDDGRSGWDDVGGLVDIRNAIKEMIELPSKFPKTFAQAPLRLRSNILLYGPPGCGKTHIVGVAAAASSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEILAGVFVFAATSRPDLLDAALLRPGRLDRLLFCNFPSWHERLEILTVLSRKLPMGNDIDLAAVANMTEGFSGADLQALLSDAQLTAVHDILDNIDTSGSEKTPVITDALLKLTASKTRPSVSEEEKRRLYSIYHQFLDSKRSVAAQSRDAKGKRATLA 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03857 1129 FunFam Peroxisome biogenesis factor 1 94 173 - -
Trre6g03857 1129 SUPERFAMILY Cdc48 domain 2-like 94 172 IPR029067 -
Trre6g03857 1129 Pfam Peroxisome biogenesis factor 1, N-terminal 98 172 IPR015342 GO:0005524|GO:0005777|GO:0007031
Trre6g03857 1129 PANTHER AAA-FAMILY ATPASE 220 1103 - -
Trre6g03857 1129 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 571 816 IPR027417 -
Trre6g03857 1129 Gene3D - 93 174 - -
Trre6g03857 1129 Gene3D - 837 1099 IPR027417 -
Trre6g03857 1129 ProSitePatterns AAA-protein family signature. 976 994 IPR003960 GO:0005524|GO:0016887
Trre6g03857 1129 CDD RecA-like_PEX1_r2 847 1004 - -
Trre6g03857 1129 MobiDBLite consensus disorder prediction 170 190 - -
Trre6g03857 1129 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 838 1098 IPR027417 -
Trre6g03857 1129 Gene3D - 738 830 - -
Trre6g03857 1129 Pfam AAA+ lid domain 1028 1067 IPR041569 -
Trre6g03857 1129 SUPERFAMILY ADC-like 10 88 IPR009010 -
Trre6g03857 1129 SMART AAA_5 586 738 IPR003593 GO:0016887
Trre6g03857 1129 SMART AAA_5 872 1008 IPR003593 GO:0016887
Trre6g03857 1129 Pfam ATPase family associated with various cellular activities (AAA) 590 735 IPR003959 GO:0005524|GO:0016887
Trre6g03857 1129 Pfam ATPase family associated with various cellular activities (AAA) 876 1003 IPR003959 GO:0005524|GO:0016887
Trre6g03857 1129 Gene3D - 1007 1086 - -
Trre6g03857 1129 Gene3D - 554 737 IPR027417 -
Trre6g03857 1129 FunFam Peroxisome biogenesis protein 1 543 737 - -
Trre6g03857 1129 FunFam Nuclear valosin-containing protein-like 834 1012 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03857 Trre-Chr6 40260863 40272398 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03857 587 793 Calmodulin-binding Proteins AT3G56690 28.365 1.94e-11 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03857 K13338 - gmx:100803882 1827.37