Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03853 ATGAGCTTCTTGAGGCCATCTGCCATGTACAATTTTGTGTTTACTTATCCTTCATCACGATGGATGCCGTGTCAGAGTTTGGGGTTCCTTCGATGGCCGGGTATTGAAGGCTTCTTTAGACTTTTGGTGGTTTTCCTTCTTTGGTCTACCTTCTCTCAACTCTGCTACATACCTTCTTCTTCTATGTACCCTACCCTTCGTGTTGGGGATCGAATTATTATCGAAAAGGCTTCATATTACATCTGGAGTCCTGCTATACATGATATTGTAACATTTCGGGATCCAACGCAGCATTGCGAAGAGAACAACACAGCTATGATTTTTATTAAAAGAGTTGTTGCAAAAGAAGGCGACACTGTTGAGGTTCATCACGGAGGACTCTATGTCAATGGTGTCGCTCAAGAGGAGGATTTCTTGGTAGAGCCACCGACATACACAACCAAATTAACTTATGTTCCAAAAGGCCATGTTTATGTGTTGGGGGATAATCGCAACAATAGCTATGATTCTCATGTATGGGGACCACTTCCTATGAAAAATATAGTTGGAAGATATGCCATGCGCTGTCACAGACCAGTAAATTGA 585 0.4222 MSFLRPSAMYNFVFTYPSSRWMPCQSLGFLRWPGIEGFFRLLVVFLLWSTFSQLCYIPSSSMYPTLRVGDRIIIEKASYYIWSPAIHDIVTFRDPTQHCEENNTAMIFIKRVVAKEGDTVEVHHGGLYVNGVAQEEDFLVEPPTYTTKLTYVPKGHVYVLGDNRNNSYDSHVWGPLPMKNIVGRYAMRCHRPVN 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03853 194 PRINTS Bacterial leader peptidase 1 (S26A) family signature 50 66 IPR000223 GO:0006508|GO:0008236|GO:0016020
Trre6g03853 194 PRINTS Bacterial leader peptidase 1 (S26A) family signature 108 120 IPR000223 GO:0006508|GO:0008236|GO:0016020
Trre6g03853 194 PRINTS Bacterial leader peptidase 1 (S26A) family signature 152 171 IPR000223 GO:0006508|GO:0008236|GO:0016020
Trre6g03853 194 ProSitePatterns Signal peptidases I serine active site. 59 66 IPR019756 GO:0004252|GO:0016020
Trre6g03853 194 FunFam Peptidase/ serine-type peptidase 59 189 - -
Trre6g03853 194 NCBIfam signal peptidase I 40 189 IPR000223 GO:0006508|GO:0008236|GO:0016020
Trre6g03853 194 PANTHER SIGNAL PEPTIDASE I 36 190 IPR000223 GO:0006508|GO:0008236|GO:0016020
Trre6g03853 194 ProSitePatterns Signal peptidases I signature 3. 157 170 IPR019758 GO:0004252|GO:0016020
Trre6g03853 194 SUPERFAMILY LexA/Signal peptidase 51 188 IPR036286 -
Trre6g03853 194 CDD S26_SPase_I 53 184 IPR019533 GO:0004252|GO:0006465
Trre6g03853 194 Gene3D Umud Fragment, subunit A 59 191 - -
Trre6g03853 194 Pfam Signal peptidase, peptidase S26 38 187 IPR019533 GO:0004252|GO:0006465
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03853 Trre-Chr6 40215178 40217631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03853 62 189 MADS-box Gene Family AT1G29960 31.783 4.09e-09 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03853 K03100 - gmx:100306121 318.546