Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03851 ATGTCCAATCATAATACTAATAATCGTCGTTCATCCTTTTCATCTTCAACAACGTCGTCCATGGCGAAACGACACCCTCCGGTAACAGTCACCGCTTCAGAGAACAACGCCGGAAAAGTTCTAGCCTCTGCCAAGAAACGTCCTCCTCTTACCAACCTCACAAATCAAAATGGTCCCCGCAATTCATCATCTTTGGTAACTAAAGTTGCAAAGACAAAGAAAGAACCTTCACTGTGTAATTCTTCAAGCTCAGCGATTTCTGGCAACAAAAAACCAACTTTGTCGAATGTTAAATCGGCTACTGTTGTTTTTCCTAAGGCCATTACAACTAGTACTACTAGTTCTTCATTTTCTGAAAGAAATGGAGTTAGGAATGAAGTTGTTGTTCCATTGGTTGGTAACACTTTCAATGTACCTGTTTCGAGTAGTATGGATTTATCGTCGCCTGGTAAATCGGATGGAATGTCGGTCTCTATGGACGAGACAATGTCGTCTTGTGATTCTTTTAAGAGTCCTGATATTGAATATGTGGATAATAGTGACGTTCCAGCTGTTGATTCTATCGAGAGGAAGACTTTTTGTAGTCTTAACATTTCTGATTCTAATTACCCAACAGGTAATATTTGTAGTAGAGACATTCTTGTTGAGTTCGAAAAGGGGGAGAAAATTGTTAATATTGATAATGATCATGTGGATCCTCAGCTTTGTGCATCTTTTGCTTGTGATATCTACAAACATTTGCGTGCATCTGAGGTAAAGAAAAGACCTTCAACAGACTTCATGGAGAAAATTCAGAAGGACATAAATCCCAGCATGCGTGCTATACTCATTGATTGGCTAGTGGAGGTTGCTGAAGAGTATAGACTTGTACCAGATACATTGTACTTGACAGTAAACTATATCGATCGATATCTTTCTGGGAATCCGATGAACAGACAACAATTACAATTACTTGGAGTTGCTTCTATGATGATTGCCTCTAAATATGAGGAGATTTGTGCACCTCAGGTGGAGGAATTTTGTTATATAACTGATAACACATACTTCAAGGAAGAGGTTTTGCAGATGGAATCTACTGTTTTGAATTTTCTGAAATTCGAAATGACGGCCCCAACAATTAAATGCTTCTTGAGAAGATTTGTACGTGCAGCTCAAGGAGTTGATGAGGTCCCTTCACTACAACTAGAGTGCTTGACAAACTATATCGCGGAATTATCTCTATTGGAGTACAGTATGCTTTGTTATGCTCCATCACTTATAGCAGCTTCTTCAATTTTCCTGGCAAAGTATATGCTTTTCCCTTCAATGAAACCATGGAATCCAACACTGCAGCATTACACTCAATACCAGCCTGCTGATTTGTGTGTTTGTGTAAAGGATCTCCACCGCCTTTGTTGCAACAGCCCTAATTCTAATTTGCCTGCAATTAAGGAGAAATACAATCAGCACAAGTATAAATATGTGGCCAAGAAGTACTGTCCTCCTTCAATACCACAAGAATATTTCCAGAATTGA 1515 0.3908 MSNHNTNNRRSSFSSSTTSSMAKRHPPVTVTASENNAGKVLASAKKRPPLTNLTNQNGPRNSSSLVTKVAKTKKEPSLCNSSSSAISGNKKPTLSNVKSATVVFPKAITTSTTSSSFSERNGVRNEVVVPLVGNTFNVPVSSSMDLSSPGKSDGMSVSMDETMSSCDSFKSPDIEYVDNSDVPAVDSIERKTFCSLNISDSNYPTGNICSRDILVEFEKGEKIVNIDNDHVDPQLCASFACDIYKHLRASEVKKRPSTDFMEKIQKDINPSMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNPMNRQQLQLLGVASMMIASKYEEICAPQVEEFCYITDNTYFKEEVLQMESTVLNFLKFEMTAPTIKCFLRRFVRAAQGVDEVPSLQLECLTNYIAELSLLEYSMLCYAPSLIAASSIFLAKYMLFPSMKPWNPTLQHYTQYQPADLCVCVKDLHRLCCNSPNSNLPAIKEKYNQHKYKYVAKKYCPPSIPQEYFQN 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03851 504 FunFam Cyclin A1 358 490 - -
Trre6g03851 504 SMART cyclin_7 375 463 IPR013763 -
Trre6g03851 504 SMART cyclin_7 278 362 IPR013763 -
Trre6g03851 504 SUPERFAMILY Cyclin-like 232 368 IPR036915 -
Trre6g03851 504 CDD CYCLIN_AtCycA_like_rpt1 232 367 - -
Trre6g03851 504 Pfam Cyclin, C-terminal domain 371 490 IPR004367 -
Trre6g03851 504 Gene3D - 256 369 - -
Trre6g03851 504 Pfam Cyclin, N-terminal domain 242 368 IPR006671 -
Trre6g03851 504 ProSitePatterns Cyclins signature. 273 304 IPR006671 -
Trre6g03851 504 MobiDBLite consensus disorder prediction 142 162 - -
Trre6g03851 504 PANTHER CYCLINS 173 482 IPR039361 -
Trre6g03851 504 MobiDBLite consensus disorder prediction 1 38 - -
Trre6g03851 504 MobiDBLite consensus disorder prediction 48 92 - -
Trre6g03851 504 FunFam Mitotic cyclin 6 256 356 - -
Trre6g03851 504 CDD CYCLIN_AtCycA-like_rpt2 371 485 - -
Trre6g03851 504 PIRSF Cyclin_A_B_D_E 4 502 IPR046965 GO:0016538|GO:0044772
Trre6g03851 504 SUPERFAMILY Cyclin-like 371 496 IPR036915 -
Trre6g03851 504 MobiDBLite consensus disorder prediction 1 92 - -
Trre6g03851 504 SMART Cyclin_C_2 371 494 IPR004367 -
Trre6g03851 504 Gene3D - 242 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03851 Trre-Chr6 40203158 40206024 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03851 8 504 Core Cell Cycle Gene Families AT1G44110 58.929 0.0 559
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03851 K06627 - gmx:100789565 715.687