Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03850 ATGTTCACCCGTAGCCGACGCTTTCCTTCTTCTGATTCATCTTCCGAGAAGAAGAAATCATCATCCGTTTCAGATAATCCAGTTTCAAGTAAAAAGGCCATCAATGCCGTTAAAACTCGCTTGACCAAGAAACGTCCGGCTCTTGCCGACGTAACTAATACCAGAAATGCCTCTCTTGGTAAATCCTCCCTTGGTGCTCCATCCAAACCCATGGTTCCGTGCATGTCCAAAACTACAAAGACAAAGAAGGATTCCATTGCCAGTTCGCAGAAAAATGTTATGTCTAGGAACATTTTGCAACCCTCATTAAAATCAAGTGGATTATTGTGCTCCAAAGAAGCATGTTCTACCAAAGCGAGTCAAACTAAGACTGGAGTTCAAGCTTTCGCTGCACCAATCAATGATGGTCCTGTTTGTCCTGATTTTAAGAACAAGGTCTGTGATCCGAGATGGATGGACATTTCTCCAAGTAATTCATTCAGTGGTTCTGTTTCACTGGATGAGAGCATGTCAACCAACAATTCTTTGATGACTCCGGAGTTAGAATATATTCGCAATGATGATGTTATATTGACCAAATCAATTGAGAATAAAACATGCAGCATTCTCAATATTTCAGACTCTTCCAAAATGGCAGGGAGAATACTGAAGTCAAGAGCTAATGAGATTGTAGACATTGACTGCAATATCAAAGACCCACAGTTTTGTGCATCCATTGCCCATGAAATCTATGAAAATTTGCGTGCATCTGAGAAAAGTAAAATGCCATCTAAGAACTTCATGGAGAAGATACAGAAAGACATAAATGCTGGCATGCGGGCAATGCTTATTGATTGGCTTGTGGAGGTTGCCGAAGAGTACAGACTTCTACCTGATACAATATTTTTGGCAGTTAACTACCTTGATCGCTATCTTTCAGGCAAAGCAATGAACAGACAGCGGTTACAACTATTAGGTGTTTCCTGCATGATGATTGCTGCTAAATACGAGGAGATCTGTGCCCCCAAGGCAGAAGAGTTCTGTTATATAACCGATAATACGTATTCTAAGGACCAGGTGTTGGACATGGAGTCCTCTGTGCTGAATTTCTTGAAGTTTGAAATGACGGCTCCTACAACTAGATGTTTTTTGAGACGCTTCATTATTGTTGCCCAAACAACATGTGAGGTTCCATTGATGCAGTTGGAGTATTTGGCTGACTATCTAGCAGAGTTATCGCTTCTAGAGTATGATATGCTTAAGTATACACCGTCATTAATAGCTGCTTCAGCCGCTTTCTTGGCTAAATATATACTACTTCCTAGGAAGAAACCTTGGAACTCTATGCTGAGGCATTACACAGGTTATCAAGCATCAGAATTGCGTGAATGTGTTAAGGGATTGCATCTGTTGTACTGCAATGGCTATCAGAATTCACCTTCCATTACTGCTATCAAAGAAAAATACAGTCAGCATAAGTTCAAGTTTGTGGCGAAGAAGTATTGTTCTCCATCAATACCAGTAGAAGTATTTCACAACTGA 1521 0.4057 MFTRSRRFPSSDSSSEKKKSSSVSDNPVSSKKAINAVKTRLTKKRPALADVTNTRNASLGKSSLGAPSKPMVPCMSKTTKTKKDSIASSQKNVMSRNILQPSLKSSGLLCSKEACSTKASQTKTGVQAFAAPINDGPVCPDFKNKVCDPRWMDISPSNSFSGSVSLDESMSTNNSLMTPELEYIRNDDVILTKSIENKTCSILNISDSSKMAGRILKSRANEIVDIDCNIKDPQFCASIAHEIYENLRASEKSKMPSKNFMEKIQKDINAGMRAMLIDWLVEVAEEYRLLPDTIFLAVNYLDRYLSGKAMNRQRLQLLGVSCMMIAAKYEEICAPKAEEFCYITDNTYSKDQVLDMESSVLNFLKFEMTAPTTRCFLRRFIIVAQTTCEVPLMQLEYLADYLAELSLLEYDMLKYTPSLIAASAAFLAKYILLPRKKPWNSMLRHYTGYQASELRECVKGLHLLYCNGYQNSPSITAIKEKYSQHKFKFVAKKYCSPSIPVEVFHN 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03850 506 FunFam Mitotic cyclin 6 256 356 - -
Trre6g03850 506 CDD CYCLIN_AtCycA-like_rpt2 371 487 - -
Trre6g03850 506 MobiDBLite consensus disorder prediction 74 91 - -
Trre6g03850 506 MobiDBLite consensus disorder prediction 49 63 - -
Trre6g03850 506 FunFam Cyclin A1 358 492 - -
Trre6g03850 506 SUPERFAMILY Cyclin-like 371 496 IPR036915 -
Trre6g03850 506 MobiDBLite consensus disorder prediction 1 91 - -
Trre6g03850 506 Pfam Cyclin, N-terminal domain 242 368 IPR006671 -
Trre6g03850 506 Pfam Cyclin, C-terminal domain 371 492 IPR004367 -
Trre6g03850 506 PIRSF Cyclin_A_B_D_E 1 504 IPR046965 GO:0016538|GO:0044772
Trre6g03850 506 SMART cyclin_7 375 463 IPR013763 -
Trre6g03850 506 SMART cyclin_7 278 362 IPR013763 -
Trre6g03850 506 Gene3D - 242 492 - -
Trre6g03850 506 ProSitePatterns Cyclins signature. 273 304 IPR006671 -
Trre6g03850 506 MobiDBLite consensus disorder prediction 1 36 - -
Trre6g03850 506 SUPERFAMILY Cyclin-like 231 368 IPR036915 -
Trre6g03850 506 Gene3D - 256 369 - -
Trre6g03850 506 SMART Cyclin_C_2 371 496 IPR004367 -
Trre6g03850 506 PANTHER CYCLINS 180 484 IPR039361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03850 Trre-Chr6 40195123 40200277 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03850 149 506 Core Cell Cycle Gene Families AT1G44110 59.128 4.33e-155 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03850 K06627 - cave:132184255 550.436