Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03839 ATGGAAACATCATCAAATCATGAGACACAGAAATCAGTATGGAGAAAGTTCTTGCCATATGTTGGTCCTGGTTTTCTTGTTTCCTTGGCTTACCTTGATCCTGGAAACATGCAAACTGATTTGCAAGCTGGAGCTAACCATAGATATGAGCTGCTGTGGATCATACTTATTGGACTCATATTTGCCCTTATAATTCAGTCATTGGCTGCAAATCTCGGCGTAACAACGGGAAAACATCTTTCAGAAGTATGCAAAGTTGAATATCCATTATTTGTGAAATACTGCTTATGGTTATTAGCAGAGGTTGCTGTCATAGCTGCTGACATACCTGAAGTGATTGGGACAGCATTTGCACTTAACATACTCTTTCACATCCCATTATGGGCAGGAGTTCTATTGACTGGCTGCAGCACTCTCTTGCTTTTGAGTCTGCAGAGGTTTGGGGTGAGGAAGTTGGAACTACTGATAACAATCTTAGTATTTGTAATGGCTGGATGTTTCTTTGCTGAAATGAGCTATGTAGATCCCCCAGTTTCTGATGTATTAAAGGGAATGTTTATACCCAAACTTGCCGGTGAAGGAACCGTAGGCGATGCTATTGCCCTATTGGGTGCCCTTATCATGCCGCACAATCTTTTCCTCCATTCTGCTCTGGTGTTATCTCGAAAAGTACCTAGTTCTGTGCGAGGCATCAATGATGCATGTAAATACTTTCTCTATGAGAGTGGATTCGCTTTGTTTGTGGCATTTTTAATCAATGTCGCAATGATTTCTGTGTCTGGAACTGTTTGTTCTGCTAGTGATCTTTCTGGAGACGATGCTGAACGCTGCAACAATCTTACCCTTAACTCTGCTTCTTTCCTTCTCAAGAATGTGTTGGGAAAATCGAGCTCAACCATTTATGCCATAGCACTGCTTGCCTCAGGACAAAGTTCTACAATCACAGGAACCTATGCAGGGCAGTACATCATGCAGGGTTTCTTGGACATAAGGATGAAAAGATGGAAAAGAAACTTGATGACTAGGTGCATTGCAATAGCACCTAGTCTTGTTGTTGCCATAGTTGGCGGTTCTTCTGGTTCTAGTCGGCTTATCATCATCGCATCGATGATACTTTCTTTTGAGCTTCCTTTCGCTTTAATTCCACTTCTTAAGTTTAGCAGCAGTAGTACAAAGATGGGACCTCATAAGAATTCAATGATTATCATTACAATCTCATGGATTCTAGGCTCTGGGATCATTGGTATCAATGTGTACTATCTCAGTACTGCTTTTGTGAAGTGGATAATTCATAGTAGTCTACCAATGGTTGCAAATGTGTTCATTGGGATTATAGTGTTTCCTCTAATGGCAATTTATATTCTCTCAATTATCTATCTGACCTTTAGAAAAGACACGGTTGAGACATTTATCGAGACAAAGAATGACACGGTAACAGAAAACCAAGTGGAAAAAGGAATGGATCCTGGTCAGTTAGAGTTGAGCGATGTTCCTTATAGAGAAGACTTAGCTGATATCCCATTACCAGAATAA 1533 0.4057 METSSNHETQKSVWRKFLPYVGPGFLVSLAYLDPGNMQTDLQAGANHRYELLWIILIGLIFALIIQSLAANLGVTTGKHLSEVCKVEYPLFVKYCLWLLAEVAVIAADIPEVIGTAFALNILFHIPLWAGVLLTGCSTLLLLSLQRFGVRKLELLITILVFVMAGCFFAEMSYVDPPVSDVLKGMFIPKLAGEGTVGDAIALLGALIMPHNLFLHSALVLSRKVPSSVRGINDACKYFLYESGFALFVAFLINVAMISVSGTVCSASDLSGDDAERCNNLTLNSASFLLKNVLGKSSSTIYAIALLASGQSSTITGTYAGQYIMQGFLDIRMKRWKRNLMTRCIAIAPSLVVAIVGGSSGSSRLIIIASMILSFELPFALIPLLKFSSSSTKMGPHKNSMIIITISWILGSGIIGINVYYLSTAFVKWIIHSSLPMVANVFIGIIVFPLMAIYILSIIYLTFRKDTVETFIETKNDTVTENQVEKGMDPGQLELSDVPYREDLADIPLPE 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03839 510 PRINTS Natural resistance-associated macrophage protein signature 149 170 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre6g03839 510 PRINTS Natural resistance-associated macrophage protein signature 124 143 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre6g03839 510 PRINTS Natural resistance-associated macrophage protein signature 369 388 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre6g03839 510 PRINTS Natural resistance-associated macrophage protein signature 96 122 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre6g03839 510 PRINTS Natural resistance-associated macrophage protein signature 199 222 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre6g03839 510 PRINTS Natural resistance-associated macrophage protein signature 309 328 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre6g03839 510 PRINTS Natural resistance-associated macrophage protein signature 337 354 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre6g03839 510 Pfam Natural resistance-associated macrophage protein 38 399 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre6g03839 510 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 7 471 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre6g03839 510 NCBIfam Nramp family divalent metal transporter 22 388 - -
Trre6g03839 510 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 15 391 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre6g03839 510 Hamap Divalent metal cation transporter MntH [mntH]. 4 425 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03839 Trre-Chr6 40066248 40069872 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03839 1 510 Inorganic Solute Cotransporters AT1G15960 58.674 0.0 623
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03839 K21398 - gmx:100787785 822.387