LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre6g03813	ATGGCAGAGCGTGTGTTACTCACTCCTTCACTCACTTTACCATCTCGACCTTCACCAACCGCAACAATGGCTACTATTAGTGGCGGCGCCGCCGTTCGCATCATCCCTTCCGCTACCAGAGCCACCGTCTCACTCTCCTCTTCTTCCCGTTCCTTTTTCTCATTTCCATCCTCTTCAAATTCCGATTCCTCGCTCAACTGCTTGCGCTCCTCTCCTCGCATTTCTCATCTATTTCTTGACCAGCGAAGATCAGAAGTTCGTGTTTCGAGTGGACGATTTGGAACGGTTTCTGCTCCGAAGGCGTTCGCGTCTGATCCTGATCAGTTGAAGAGTGCTAGAGAAGATATAAAGGAGCTTCTCAAGACTAAGTTTTGTCATCCTCTTTTGATTCGTTTGGGATGGCATGATGCTGGTACTTATAATAAGAATATTGACGAGTTTCCACAAAGAGGCGGTGCCAATGGTAGCTTAAGATTTGAAGCTGAGTTGAAACATGGAGCCAATGCTGGACTTGTAAATGCATTGAAACTTCTCCAGCCAATCAAAGACAAATATTCAGGCGTGACATATGCTGACTTATTTCAGTTAGCTGGTGCTACAGCTGTGGAGGAAGCTGGAGGCCCGAAAATTCCCATGAAATATGGAAGAGTAGATGTCACTGGACCTGAACAATGCCCAGAAGAAGGGAGACTTCCTGATGCAGGCCCCCCTTCACCTGCTGATCATTTGCGCAAAGTTTTCTACCGAATGGGGTTGAATGACAAGGAAATAGTTGCATTATCTGGTGCACACACACTGGGGCGGTCTAGACCTGAGCGTAGTGGCTGGGGCAAACCTGAGACTAAATACACGAAAGATGGGCCTGGAGCACCTGGGGGACAATCCTGGACTGCACAATGGTTAAAATTTGACAACTCTTACTTTAAGGACATCAAAGAAAAAAAGGATGAAGATCTATTGGTCTTGCCAACTGATGCTGCTCTTTTTGACGATCCTTCCTTCAAGGTATATGCTGAGAAATATGTTGAAGATCAAGAAGCATTCTTTAAAGATTATGCCGAAGCACATGCCAAACTCAGCAACCTTGGAGCCAAATTTGATCCTCCAGAGGGCATTGTGATAGATGGCTCTCCAAATGCAGTGGGAGAGAAGTTTGTAGCAGCCAAGTACTCCTCTGGAAAGGAGTAA	1188	0.4621	MAERVLLTPSLTLPSRPSPTATMATISGGAAVRIIPSATRATVSLSSSSRSFFSFPSSSNSDSSLNCLRSSPRISHLFLDQRRSEVRVSSGRFGTVSAPKAFASDPDQLKSAREDIKELLKTKFCHPLLIRLGWHDAGTYNKNIDEFPQRGGANGSLRFEAELKHGANAGLVNALKLLQPIKDKYSGVTYADLFQLAGATAVEEAGGPKIPMKYGRVDVTGPEQCPEEGRLPDAGPPSPADHLRKVFYRMGLNDKEIVALSGAHTLGRSRPERSGWGKPETKYTKDGPGAPGGQSWTAQWLKFDNSYFKDIKEKKDEDLLVLPTDAALFDDPSFKVYAEKYVEDQEAFFKDYAEAHAKLSNLGAKFDPPEGIVIDGSPNAVGEKFVAAKYSSGKE	395

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre6g03813	395	CDD	ascorbate_peroxidase	97	367	-	-
	Trre6g03813	395	ProSitePatterns	Peroxidases proximal heme-ligand signature.	256	266	IPR019793	-
	Trre6g03813	395	FunFam	L-ascorbate peroxidase T, chloroplastic	234	357	-	-
	Trre6g03813	395	Gene3D	-	112	365	-	-
	Trre6g03813	395	FunFam	L-ascorbate peroxidase S chloroplastic/mitochondrial	112	236	-	-
	Trre6g03813	395	PANTHER	THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED	95	366	IPR044831	GO:0004601\|GO:0034599
	Trre6g03813	395	SUPERFAMILY	Heme-dependent peroxidases	104	365	IPR010255	GO:0004601\|GO:0006979\|GO:0020037
	Trre6g03813	395	Pfam	Peroxidase	113	344	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
	Trre6g03813	395	PRINTS	Plant ascorbate peroxidase signature	206	218	IPR002207	GO:0004601\|GO:0006979\|GO:0020037
	Trre6g03813	395	PRINTS	Plant ascorbate peroxidase signature	105	125	IPR002207	GO:0004601\|GO:0006979\|GO:0020037

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre6g03813	Trre-Chr6	39706023	39711409	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre6g03813	113	362	Peroxidase	AT2G22420	28.058	1.01e-17	81.6

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre6g03813	K00434		-	gmx:100802238	643.269

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