Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03809 ATGGCGGAAGAGACCAATCCTATGGAAATTGACGTCATTGCCGCCGGTAACCCTTCCTACGGTGGCAGGGCTTCTCTATGGGTCGAAAAGTACCGTCCTCAGTCGCTCGACGACGTCGCTGCTCACCGTGACATTGTCGACACAATTGATAGATTGACTACTGAGAATAGATTACCGCATCTTCTGTTGTATGGTCCTCCTGGAACGGGAAAAACTTCAACGATTCTCGCTGTGGCACGCAAATTATACGGCGCACAATATAAAAAGATGATTTTGGAGCTTAATGCTTCTGATGATAGAGGAATTGATGTTGTTAGACAGCAGATTCAAGATTTTGCTAGCACTCAGAGCTTCAATATATTTGGCGCCAAGCCCTCTGTAAAACTGGTCTTGTTAGATGAAGCTGATGCCATGACTAAGGATGCTCAATTTGCATTACGTAGAGTTATTGAGAAATATACAAAGGGCACTAGGTTTGCACTTATCTGTAATCATGTAAACAAGATTATCCCAGCATTGCAATCAAGATGCACCCGGTTTCGGTTTGCCCCTCTTGATGCTGTCCATGTCACCGAAAGACTGAGACATGTTATTAATGCTGAAAGGCTTGATGTTGAAGATAGTGGCTTATCTGCTCTTGTTCGGCTTAGCAATGGTGATATGAGAAAGGCATTGAATATTCTTCAGTCAACACATATGGCCTCTCCGAAGATAACAGAAGAAGCTGTTTACCTTTGCACGGGAAATCCTTTGCCCAAAGACATTGAGCAAATATCTTACTGGCTTCTAAATGAACAATATTCAGATAGCTTTAAAAGAATACATGATATGAAAACAAGGAAAGGACTGGCTCTGATTGATATTGTAAGAGAAGTGACAATGTTTGTCTTTAAGATTAAGATGCCTCCAGCCGTTCGAGTGCAGTTGGTGAATGATTTGGCTGACATAGAGTACAGATTAACTTTTGGGTGCAACGATAAGCTTCAGCTTGGATCAGTTGTTGCTTCATTTACACGTGCTAGATCTGCACTGGTTGCAGCTGCTGCTGCATAA 1053 0.4245 MAEETNPMEIDVIAAGNPSYGGRASLWVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYKKMILELNASDDRGIDVVRQQIQDFASTQSFNIFGAKPSVKLVLLDEADAMTKDAQFALRRVIEKYTKGTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLRHVINAERLDVEDSGLSALVRLSNGDMRKALNILQSTHMASPKITEEAVYLCTGNPLPKDIEQISYWLLNEQYSDSFKRIHDMKTRKGLALIDIVREVTMFVFKIKMPPAVRVQLVNDLADIEYRLTFGCNDKLQLGSVVASFTRARSALVAAAAA 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03809 350 SUPERFAMILY post-AAA+ oligomerization domain-like 250 340 IPR008921 GO:0003677|GO:0006260
Trre6g03809 350 Pfam ATPase family associated with various cellular activities (AAA) 61 183 IPR003959 GO:0005524|GO:0016887
Trre6g03809 350 FunFam Replication factor C subunit 5 187 249 - -
Trre6g03809 350 FunFam Replication factor C subunit 5 250 347 - -
Trre6g03809 350 Gene3D - 250 348 - -
Trre6g03809 350 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 26 243 IPR027417 -
Trre6g03809 350 Gene3D - 22 184 IPR027417 -
Trre6g03809 350 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 27 331 - -
Trre6g03809 350 CDD AAA 45 184 - -
Trre6g03809 350 Gene3D - 188 249 - -
Trre6g03809 350 CDD HLD_clamp_RFC 185 247 - -
Trre6g03809 350 Pfam Replication factor C C-terminal domain 250 336 IPR013748 -
Trre6g03809 350 SMART AAA_5 57 188 IPR003593 GO:0016887
Trre6g03809 350 FunFam Replication factor C subunit 5 20 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03809 Trre-Chr6 39431161 39437084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03809 1 348 Core DNA Replication Machinery Family AT1G77470 73.514 0.0 558
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03809 K10756 - gmx:100782652 585.104