Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03807 ATGGAACGCGAGGAGGGAAAACAATCTTCTCAAAAAAATCCATACACAGAACTTGAGGAAGTTAGCTCCGATTTTATTCTAGCAATTGATTTGCAAGAACAAGAGTTAGAGAGAACAACATTCACAAACCTAGCAACCATTGAAAGTGAAAGTGACGAAGATGTAACCGAGTCTTCTTTTAGTAACGATGATATTGGTGATGCTGATTTTTCATTTAGTCAAGAGTTCGAAACCGATCTTCAATTTCTTGAAGACGAAGGAAGCAATATTGATGATGAAGACGATGACTACGATGAAATGGAAGAAGATGAGATTGATCCTGATGAATTATCTTACGAAGAGTTGATTGAGTTAGGAGATTTTATAGGAGAAGAAAAAAGAGGATTATCACCTAATGAAATCTCTTCTTGCTTATATCCCCATACTTGCAAAATTGCTGAAAGAAAAAGTGGAATAGATCGTTGTGTGATTTGTCAGATTGAATATGAAGATGGTGAAGCCTTAGTTGCACTTCATTGTGATCATCCTTATCATACAGATTGTATAAGCAAGTGGCTTCAAATTAAGAAGGTTTGTCCAATTTGTAGCAATGAAGTTTCAACTCCTAACAAGGCTAAGAACACTTGA 627 0.3573 MEREEGKQSSQKNPYTELEEVSSDFILAIDLQEQELERTTFTNLATIESESDEDVTESSFSNDDIGDADFSFSQEFETDLQFLEDEGSNIDDEDDDYDEMEEDEIDPDELSYEELIELGDFIGEEKRGLSPNEISSCLYPHTCKIAERKSGIDRCVICQIEYEDGEALVALHCDHPYHTDCISKWLQIKKVCPICSNEVSTPNKAKNT 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03807 208 Coils Coil 83 103 - -
Trre6g03807 208 SUPERFAMILY RING/U-box 154 202 - -
Trre6g03807 208 MobiDBLite consensus disorder prediction 44 68 - -
Trre6g03807 208 ProSiteProfiles Zinc finger RING-type profile. 155 196 IPR001841 -
Trre6g03807 208 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 205 IPR013083 -
Trre6g03807 208 MobiDBLite consensus disorder prediction 1 22 - -
Trre6g03807 208 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 29 200 IPR033276 GO:0004842|GO:0016567|GO:0046621
Trre6g03807 208 SMART ring_2 155 195 IPR001841 -
Trre6g03807 208 Pfam Ring finger domain 154 195 IPR001841 -
Trre6g03807 208 FunFam E3 ubiquitin ligase BIG BROTHER-related 121 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03807 Trre-Chr6 39412264 39412890 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03807 102 199 C3H Transcription Factor Family AT3G63530 51.485 6.55e-29 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03807 K19045 - gmx:100526881 285.034