Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03495 ATGAGTGTGTATGATCCTATTCACCAGATTAATATGTGGGGAGAAGGTTTCAAAAGTAATGGAAATTTAAGCTCGTCCATGCCGTTAATTGATGAGGTGGACTTAAAGTTTGATAGTAGTCAGTCAGAAGATGCTTCTCATGGTATACTCGGAACATCTAACAAGTATGATCAAGAAGCTAGTAGACCTATTGATAAGATACAAAGACGTCTTGCACAAAATCGAGAGGCTGCTCGTAAGAGCCGTCTGAGGAAAAAGGCTTATGTGCAGCAATTAGAATCAAGTCGTTTGAAGTTGGTGCAGTTGGAGCAAGAGCTTGAACGCGTAAGACAGCAGGGAATGTATATGAGTAGTGGATTGGATTCTAATAATATGTGTTTTGCTGGACCTATGAATTCAGCCTTTGAGATGGAGTATGGACATTGGGTTGATGAGCAAAACCGGCAAATTTCGGAAATGAGAAATGCCTTAAACTCGCATATTAGTGACATAGAGCTCAGGATTCTGGTTGATGGTATGATGAATCACTATGCTGAAATCTATCGCATGAAGTCTGCGGCTGCAAAAGCAGATGTTTTTTATGTTATGTCCGGTATGTGGAAAACAACAGCTGAACGGTTTTTCTTGTGGATCGGTGGTTTTCGCCCCTCTGAGCTTCTCAAGATTCTTGGTCCAATGATTGAACCCTTGACAGAGCAGCAACGATTAGATATTGATAACCTCGGACAATCATGTCAACAAGCAGAAGATGCTCTTTCACAAGGCATGGAAAAACTTCGGCAAACACTCGCTGATAGTGTAGCATCTGGACAATTCATTGATGGAACATATATTCCGCAGATGGCCACTGCAATGGAGAAGTTAGAAGCTCTTGTGTGTTTTGTGAATCAGGCTGACCATCTTCGGCAGGAGACCTTGCAGCAAATGTCGCGAATACTTACAATCCGTCAGTCAGCTCGATGCTTACTTGCTTTAGGAGAATATTTCCAACGCCTAAGGGCTTTGAGCTCACTATGGTCTAATCGACCCCGTGAACCTGCTTAG 1044 0.4253 MSVYDPIHQINMWGEGFKSNGNLSSSMPLIDEVDLKFDSSQSEDASHGILGTSNKYDQEASRPIDKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLVQLEQELERVRQQGMYMSSGLDSNNMCFAGPMNSAFEMEYGHWVDEQNRQISEMRNALNSHISDIELRILVDGMMNHYAEIYRMKSAAAKADVFYVMSGMWKTTAERFFLWIGGFRPSELLKILGPMIEPLTEQQRLDIDNLGQSCQQAEDALSQGMEKLRQTLADSVASGQFIDGTYIPQMATAMEKLEALVCFVNQADHLRQETLQQMSRILTIRQSARCLLALGEYFQRLRALSSLWSNRPREPA 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03495 347 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 64 108 IPR004827 GO:0003700|GO:0006355
Trre6g03495 347 Pfam bZIP transcription factor 66 106 IPR004827 GO:0003700|GO:0006355
Trre6g03495 347 PANTHER TRANSCRIPTION FACTOR TGA9 2 345 - -
Trre6g03495 347 CDD bZIP_HBP1b-like 66 118 - -
Trre6g03495 347 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 69 84 IPR004827 GO:0003700|GO:0006355
Trre6g03495 347 MobiDBLite consensus disorder prediction 42 58 - -
Trre6g03495 347 FunFam BZIP family transcription factor 65 114 - -
Trre6g03495 347 MobiDBLite consensus disorder prediction 42 61 - -
Trre6g03495 347 SUPERFAMILY Leucine zipper domain 66 109 IPR046347 GO:0003700|GO:0006355
Trre6g03495 347 Coils Coil 143 163 - -
Trre6g03495 347 Gene3D - 65 118 - -
Trre6g03495 347 Coils Coil 85 112 - -
Trre6g03495 347 Pfam Seed dormancy control 149 223 IPR025422 GO:0006351|GO:0043565
Trre6g03495 347 SMART brlzneu 62 126 IPR004827 GO:0003700|GO:0006355
Trre6g03495 347 ProSiteProfiles DOG1 domain profile. 132 342 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03495 Trre-Chr6 35498955 35500815 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03495 1 347 Calmodulin-binding Proteins AT5G65210 67.324 3.02e-176 492
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre6g03495 DOG1 9.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03495 K14431 - gmx:100793353 595.119