Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03493 ATGAATTCACCTTCCGCGCAGTTTGTTTCCTCGAGAAGGATGAGTGTGTATGATCCTATTCACCAGATTAATATGTGGGGAGAAGGTTTCAAAAGTAATGGAAATTTAAGCTCGTCCATGCCGTTAATTGATGAGGTGGACTTAAAGTTTGATAGTAGTCAGTCAGAAGATGCTTCTCATGGTATACTCGGAACATCTAACAAGTATGATCAAGAAGCTAGTAGACCTATTGATAAGATACAAAGACGTCTTGCACAAAATCGAGAGGCTGCTCGTAAGAGCCGTCTGAGGAAAAAGGCTTATGTGCAGCAATTAGAATCAAGTCGTTTGAAGTTGGTGCAGTTGGAGCAAGAGCTTGAACGCGTAAGACAGCAGGGAATGTATATGAGTAGTGGATTGGATTCTAATAATATGTGTTTTGCTGGACCTATGAATTCAGGAATTGCAGCCTTTGAGATGGAGTATGGACATTGGGTTGATGAGCAAAACCGGCAAATTTCGGAAATGAGAAATGCCTTAAACTCGCATATTAGTGACATAGAGCTCAGGATTCTGGTTGATGGTATGATGAATCACTATGCTGAAATCTATCGCATGAAGTCTGCGGCTGCAAAAGCAGATGTTTTTTATGTTATGTCCGGTATGTGGAAAACAACAGCTGAACGGTTTTTCTTGTGGATCGGTGGTTTTCGCCCCTCTGAGCTTCTCAAGATTCTTGGTCCAATGATTGAACCCTTGACAGAGCAGCAACGATTAGATATTGATAACCTCGGACAATCATGTCAACAAGCAGAAGATGCTCTTTCACAAGGCATGGAAAAACTTCGGCAAACACTCGCTGATAGTGTAGCATCTGGACAATTCATTGATGGAACATATATTCCGCAGATGGCCACTGCAATGGAGAAGTTAGAAGCTCTTGTGTGTTTTGTGAATCAGGCTGACCATCTTCGGCAGGAGACCTTGCAGCAAATGTCGCGAATACTTACAATCCGTCAGTCAGCTCGATGCTTACTTGCTTTAGGAGAATATTTCCAACGCCTAAGGGCTTTGAGCTCACTATGGTCTAATCGACCCCGTGAACCTGCTTAG 1092 0.4277 MNSPSAQFVSSRRMSVYDPIHQINMWGEGFKSNGNLSSSMPLIDEVDLKFDSSQSEDASHGILGTSNKYDQEASRPIDKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLVQLEQELERVRQQGMYMSSGLDSNNMCFAGPMNSGIAAFEMEYGHWVDEQNRQISEMRNALNSHISDIELRILVDGMMNHYAEIYRMKSAAAKADVFYVMSGMWKTTAERFFLWIGGFRPSELLKILGPMIEPLTEQQRLDIDNLGQSCQQAEDALSQGMEKLRQTLADSVASGQFIDGTYIPQMATAMEKLEALVCFVNQADHLRQETLQQMSRILTIRQSARCLLALGEYFQRLRALSSLWSNRPREPA 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03493 363 CDD bZIP_HBP1b-like 79 131 - -
Trre6g03493 363 FunFam BZIP family transcription factor 78 127 - -
Trre6g03493 363 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 82 97 IPR004827 GO:0003700|GO:0006355
Trre6g03493 363 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 77 121 IPR004827 GO:0003700|GO:0006355
Trre6g03493 363 Gene3D - 78 131 - -
Trre6g03493 363 SUPERFAMILY Leucine zipper domain 79 122 IPR046347 GO:0003700|GO:0006355
Trre6g03493 363 Pfam Seed dormancy control 165 239 IPR025422 GO:0006351|GO:0043565
Trre6g03493 363 Coils Coil 159 179 - -
Trre6g03493 363 SMART brlzneu 75 139 IPR004827 GO:0003700|GO:0006355
Trre6g03493 363 Coils Coil 98 125 - -
Trre6g03493 363 Pfam bZIP transcription factor 79 119 IPR004827 GO:0003700|GO:0006355
Trre6g03493 363 PANTHER TRANSCRIPTION FACTOR TGA9 1 361 - -
Trre6g03493 363 ProSiteProfiles DOG1 domain profile. 148 358 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03493 Trre-Chr6 35498916 35500815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03493 1 363 Calmodulin-binding Proteins AT5G65210 67.935 0.0 518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre6g03493 DOG1 9.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03493 K14431 - gmx:100793353 623.624