Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03476 ATGTGTCTGTTTGTAGCTCATGTTAGCGTGCATCAGTTACATGAGCTTAATGTCATTGACATTGTATTGAAGGAGCTAGCAACTCAGCTATGTTTCAATCCGTATTTAAGAAAACCACATAATCTGAGTGGTGTCTTGGAATCGTGGCACGGTTTCTACCAAAGAATAAGGTCTACTCTGATAGGATTATCGCAGAATGTTGACTTGTCATCATTGGGATTTATAGAACCGCTCGCTGTGATTAACACTGTAGCTCAAATCTTGCTACAATTTGGTCCGTGGAACATGGCAAACAAGTTGGTGGAAATTGTTCCATCAGGATTGGTATTGTTCAACCTGCAAAAGCTTCCAGTAAAGTCAGTTTCAGTTCAGGTGTGTAAAATTTACCACAGGACCAAAAAAGTACATAGGGACATGTCAAAGATATTTGTTCCATATGTTGGGATAGCAGTGGACAATGGATTGCCTCTGCCAGCGAAGATGATGTGCTTGACTTCAGTGCTTGACTTGACACCAAGAAGAAACTACAGGTGTTCAATGATCCTAGGGCATTAA 555 0.4072 MCLFVAHVSVHQLHELNVIDIVLKELATQLCFNPYLRKPHNLSGVLESWHGFYQRIRSTLIGLSQNVDLSSLGFIEPLAVINTVAQILLQFGPWNMANKLVEIVPSGLVLFNLQKLPVKSVSVQVCKIYHRTKKVHRDMSKIFVPYVGIAVDNGLPLPAKMMCLTSVLDLTPRRNYRCSMILGH 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03476 184 SMART DUF1785_2 26 77 IPR014811 -
Trre6g03476 184 Pfam Argonaute linker 1 domain 38 75 IPR014811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03476 Trre-Chr6 34927696 34930255 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03476 4 88 Eukaryotic Initiation Factors Gene Family AT5G43810 42.857 1.20e-17 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03476 - K11593 gmx:100808457 97.4413