Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g03475 ATGTGTCTGTTTGTAGCTCATGTTAGCGTGCATCAGTTACATGAGCTTAATGTCATTGACATTGTATTGAAGGAGCTAGCAACTCAGCTATGTTTCAATCCGTATTTAAGAAAACCACATAATCTGAGTGGTGTCTTGGAATCGTGGCACGGTTTCTACCAAAGAATAAGGTCTACTCTGATAGGATTATCGCAGAATGTTGACTTGTCATCATTGGGATTTATAGAACCGCTCGCTGTGATTAACACTGTAGCTCAAATCTTGCTACAATTTGGTCCGTGGAACATGGCAAACAAGTTGGTGGAAATTGTTCCATCAGGATTGGTATTGTTCAACCTGCAAAAGCTTCCAGTAAAGTCAGTTTCAGTTCAGGGACATGTCAAAGATATTTGTTCCATATGTTGGGATAGCAGTGGACAATGGATTGCCTCTGCCAGCGAAGATGATAAGAAACTACAGGTGTTCAATGATCCTAGGGCATTAACAGAAGATGACCTGTACGAGTTGTGA 510 0.4098 MCLFVAHVSVHQLHELNVIDIVLKELATQLCFNPYLRKPHNLSGVLESWHGFYQRIRSTLIGLSQNVDLSSLGFIEPLAVINTVAQILLQFGPWNMANKLVEIVPSGLVLFNLQKLPVKSVSVQGHVKDICSICWDSSGQWIASASEDDKKLQVFNDPRALTEDDLYEL 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g03475 169 SMART DUF1785_2 26 77 IPR014811 -
Trre6g03475 169 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 98 155 IPR011047 -
Trre6g03475 169 Gene3D - 94 159 IPR015943 GO:0005515
Trre6g03475 169 Pfam WD domain, G-beta repeat 122 156 IPR001680 GO:0005515
Trre6g03475 169 Pfam Argonaute linker 1 domain 38 75 IPR014811 -
Trre6g03475 169 SMART WD40_4 114 156 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g03475 Trre-Chr6 34927670 34930255 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g03475 4 88 Eukaryotic Initiation Factors Gene Family AT5G43810 42.857 8.12e-18 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g03475 - K11593 gmx:100808457 97.4413